View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17959_low_6 (Length: 542)
Name: NF17959_low_6
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17959_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 48726154 - 48725624
Alignment:
| Q |
1 |
ctccgggcatctgctaacattttacgttgttgtaattttcccattcattttcaggtatgaccatagttctggccatgcactttttgttgtcttctcagtg |
100 |
Q |
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| T |
48726154 |
ctccgggcatctgctaacattttacgttgctgtaattttcccattcattttcaggtatgaccatagttctggccatgcactttttgttgtcttctcagtg |
48726055 |
T |
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| Q |
101 |
ttgctattccattttctattgactggcatatttctggcaactttttgttggtaaggctgctttctactgtaaattattcatccttttcttcaagtcatta |
200 |
Q |
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| T |
48726054 |
ttgctattccattttctattgactggcatatttctggcaactttttgttggtaaggctgctttctactgtaaattattcatccttttcttcaagtcatta |
48725955 |
T |
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| Q |
201 |
gagtttgataacaaagctgatgtatacgttttgacccatatattctccaggttcctaactaattcttatcttcgagaagaggctccaaacagttatgtgg |
300 |
Q |
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| T |
48725954 |
gagtttgataacaaagctgatgtatacgttttgacccatatattctccaggttcctaactaattcttatcttcgagaagaggctccaaacagttatgtgg |
48725855 |
T |
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| Q |
301 |
ttgaacagcgtgttgaatggtaagatcaagaatgttcttgctagttttcatcatgctgactcattttagttgtatgcatgttcaattttcagagcatgca |
400 |
Q |
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| T |
48725854 |
ttgaacagcgtgttgaatggtaagatcaagaatgttcttgctagttttcattatgttgactcattttagttgtatgcatgttcaattttcagagcatgca |
48725755 |
T |
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| Q |
401 |
ctaccatttggtcaaatgttatttagggaaggcttattttaaatgttttgattatgttaatgagcacagagtttacttgatcacc-nnnnnnnnaatatt |
499 |
Q |
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| T |
48725754 |
ctaccatttggtcaaatgttatttagggaaggcttattttaaatgttttgattatgttaatgagcacagagtttacttgatcacctttttttttaatatt |
48725655 |
T |
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| Q |
500 |
taatgattaatttccaattgctgattatatt |
530 |
Q |
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| T |
48725654 |
taatgattaatttccaattgctgattatatt |
48725624 |
T |
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