View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17959_low_9 (Length: 493)

Name: NF17959_low_9
Description: NF17959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17959_low_9
NF17959_low_9
[»] chr2 (12 HSPs)
chr2 (1-477)||(20927403-20927879)
chr2 (186-375)||(9829344-9829533)
chr2 (236-376)||(8277182-8277322)
chr2 (236-349)||(22787801-22787914)
chr2 (236-367)||(35000444-35000575)
chr2 (236-365)||(11573851-11573987)
chr2 (243-379)||(31133335-31133471)
chr2 (379-475)||(20934789-20934885)
chr2 (379-477)||(20953325-20953423)
chr2 (234-373)||(19987720-19987861)
chr2 (301-373)||(12892382-12892454)
chr2 (194-304)||(20500422-20500534)
[»] chr3 (13 HSPs)
chr3 (186-379)||(54335604-54335797)
chr3 (178-379)||(20518045-20518246)
chr3 (194-379)||(30933791-30933976)
chr3 (194-379)||(11916888-11917073)
chr3 (202-379)||(53767190-53767367)
chr3 (194-376)||(30528455-30528637)
chr3 (202-360)||(14443735-14443893)
chr3 (236-365)||(7666699-7666828)
chr3 (236-376)||(19866950-19867091)
chr3 (253-377)||(39649703-39649827)
chr3 (236-365)||(35995304-35995433)
chr3 (236-333)||(34086603-34086700)
chr3 (236-366)||(35063134-35063263)
[»] chr1 (15 HSPs)
chr1 (178-379)||(23941577-23941778)
chr1 (194-379)||(16315123-16315308)
chr1 (178-379)||(12063502-12063703)
chr1 (178-379)||(30704303-30704504)
chr1 (236-379)||(3368237-3368380)
chr1 (236-365)||(48025756-48025884)
chr1 (236-365)||(25817616-25817745)
chr1 (236-365)||(33402876-33403005)
chr1 (236-365)||(35577256-35577385)
chr1 (300-377)||(18426363-18426440)
chr1 (379-461)||(3349734-3349816)
chr1 (379-461)||(4334603-4334685)
chr1 (379-450)||(2006811-2006882)
chr1 (386-477)||(4322720-4322811)
chr1 (379-461)||(2948064-2948146)
[»] chr7 (12 HSPs)
chr7 (178-379)||(23941285-23941486)
chr7 (218-376)||(44221991-44222149)
chr7 (178-379)||(4278544-4278746)
chr7 (194-379)||(11356297-11356482)
chr7 (236-378)||(2369655-2369797)
chr7 (236-362)||(4452395-4452521)
chr7 (197-379)||(13070446-13070618)
chr7 (198-379)||(12868575-12868757)
chr7 (236-322)||(4452757-4452843)
chr7 (223-349)||(31730894-31731021)
chr7 (303-379)||(23562286-23562362)
chr7 (315-373)||(2834739-2834797)
[»] chr5 (14 HSPs)
chr5 (178-379)||(32910527-32910728)
chr5 (194-379)||(29195823-29196008)
chr5 (195-379)||(15235035-15235222)
chr5 (178-368)||(20887674-20887864)
chr5 (236-365)||(30491525-30491655)
chr5 (236-365)||(38739554-38739682)
chr5 (236-376)||(34017398-34017538)
chr5 (236-365)||(763115-763243)
chr5 (233-376)||(5504930-5505069)
chr5 (194-318)||(35050308-35050432)
chr5 (236-331)||(33143948-33144043)
chr5 (236-321)||(16109319-16109403)
chr5 (231-324)||(8736460-8736555)
chr5 (299-373)||(23276021-23276095)
[»] scaffold0599 (1 HSPs)
scaffold0599 (194-379)||(8639-8824)
[»] chr4 (18 HSPs)
chr4 (194-379)||(50008793-50008978)
chr4 (194-379)||(50336188-50336373)
chr4 (230-364)||(22182152-22182286)
chr4 (194-379)||(33990720-33990905)
chr4 (194-379)||(43209986-43210171)
chr4 (203-379)||(41418878-41419054)
chr4 (178-333)||(156888-157043)
chr4 (236-365)||(24972607-24972736)
chr4 (194-358)||(1938538-1938702)
chr4 (194-379)||(12656473-12656665)
chr4 (236-365)||(23283379-23283508)
chr4 (236-362)||(36499124-36499250)
chr4 (236-351)||(55523943-55524058)
chr4 (236-343)||(12586403-12586510)
chr4 (240-379)||(45246749-45246888)
chr4 (194-271)||(5534180-5534257)
chr4 (234-347)||(6599370-6599486)
chr4 (299-371)||(24904254-24904326)
[»] chr8 (14 HSPs)
chr8 (197-379)||(13868174-13868358)
chr8 (218-379)||(32075008-32075168)
chr8 (181-379)||(24626034-24626228)
chr8 (194-379)||(2807153-2807338)
chr8 (186-290)||(20534367-20534471)
chr8 (231-379)||(14189775-14189925)
chr8 (286-379)||(20532087-20532180)
chr8 (178-275)||(22661841-22661938)
chr8 (244-365)||(34276417-34276538)
chr8 (194-307)||(41601078-41601191)
chr8 (232-379)||(27188174-27188323)
chr8 (307-379)||(22661933-22662005)
chr8 (6-40)||(23502645-23502679)
chr8 (236-272)||(33228335-33228371)
[»] scaffold1050 (1 HSPs)
scaffold1050 (178-379)||(2003-2205)
[»] chr6 (8 HSPs)
chr6 (236-365)||(31522355-31522484)
chr6 (230-368)||(13543661-13543798)
chr6 (236-365)||(32275553-32275682)
chr6 (197-343)||(8518467-8518615)
chr6 (265-307)||(4321590-4321632)
chr6 (231-270)||(7452450-7452489)
chr6 (319-368)||(7452361-7452410)
chr6 (325-377)||(4321528-4321580)
[»] scaffold0037 (1 HSPs)
scaffold0037 (236-351)||(38133-38248)
[»] scaffold1063 (1 HSPs)
scaffold1063 (236-365)||(1643-1772)


Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 20927879 - 20927403
Alignment:
Q  1 agggcatgctgaggtggctagtggtaaaacagaattgccaaagttgccagggagatgagagaaatctgttaaaaggagataagtgagatgtgagacaaaa 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||||    
T  20927879 agggaatgctgaggtggctagtggtaaaacagaattgccaaagttgccagggtgataagggaaatctgttaaaaggagacaagtgagatgtgagacaaaa 20927780  T
Q  101 tagaatgaaatctgctctttacccaacaaaattcactcgcgcccaactgaatttacatatttacccatgtgctactgaagtcacacagagttgctgtttt 200  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||    
T  20927779 tagaatgaattctgctctttacccaacaaaattcacctgcgcccaactgaatttacatatttacccctgcgctacttaagtcacacagagttactgtttt 20927680  T
Q  201 tgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattcca 300  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20927679 tgtacaaagcccaccagtccatactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattcca 20927580  T
Q  301 aatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcataattggaaagtattgtcaaag 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20927579 aatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgtatcatctaaactcataattggaaagtattttcaaag 20927480  T
Q  401 ttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatc 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20927479 ttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatc 20927403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 186 - 375
Target Start/End: Complemental strand, 9829533 - 9829344
Alignment:
Q  186 cagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtc 285  Q
    ||||||| ||||||| ||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| || |||| ||||    
T  9829533 cagagttactgttttcgtacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaactcaaaaagtgcgaatttttgggtc 9829434  T
Q  286 aaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaac 375  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| | ||||||| ||||    
T  9829433 aaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcatgtattatatcatcaaaac 9829344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 236 - 376
Target Start/End: Complemental strand, 8277322 - 8277182
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| ||||||||  |||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  8277322 ttttctttccctccacctccaaaaacctcaaaaatgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 8277223  T
Q  336 ctcatcaagcatcaaatatcaggtaatgtatcatctaaact 376  Q
    ||||||||| |||||| | ||||||||||||| || |||||    
T  8277222 ctcatcaagtatcaaagaacaggtaatgtatcgtcaaaact 8277182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 22787914 - 22787801
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| |||||||||| ||||||| || |||| ||||||||||||||||| ||||||||||||||||||| |||| ||||||||| |    
T  22787914 ttttctttccctccacctccaaaaacccataaagtgcgaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtcatgaagtaagtttctacg 22787815  T
Q  336 ctcatcaagcatca 349  Q
    ||||||||||||||    
T  22787814 ctcatcaagcatca 22787801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 236 - 367
Target Start/End: Original strand, 35000444 - 35000575
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||| |||||||  ||||||||||||||||| || |||| ||||||||||||| |||||||||||||||||||| |||||||||||| | ||      
T  35000444 ttttctttccttccacctctaaaaacccaaaaagtgcgaacttttgggtcaaaatcttcgttccaaatcattgcaaatcgccaggaagcaagtctataca 35000543  T
Q  336 ctcatcaagcatcaaatatcaggtaatgtatc 367  Q
    |||||||||||||||| | |||||||||||||    
T  35000544 ctcatcaagcatcaaagaacaggtaatgtatc 35000575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 11573851 - 11573987
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaa-------aattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagt 328  Q
    |||||||||||||||||| ||||||||| |||||||| |       |||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  11573851 ttttctttccctccacctccaaaaaccccaaaagtgcgatgtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagt 11573950  T
Q  329 ttctaggctcatcaagcatcaaatatcaggtaatgta 365  Q
    ||||| ||||||||||||||||| | |||||||||||    
T  11573951 ttctatgctcatcaagcatcaaagaacaggtaatgta 11573987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 243 - 379
Target Start/End: Original strand, 31133335 - 31133471
Alignment:
Q  243 tccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatca 342  Q
    ||||||||||| |||||||||||||||||  || |||| |||||||||||||||||||||| |||||||||||| |  || |||||||||| | ||||||    
T  31133335 tccctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttcattccaaattattgcaaatcgttataaaacaagtttctatgttcatca 31133434  T
Q  343 agcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||||||||| | ||||||||||| | || ||||||||    
T  31133435 agcatcaaagaacaggtaatgtaccgtcaaaactcat 31133471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 379 - 475
Target Start/End: Complemental strand, 20934885 - 20934789
Alignment:
Q  379 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagcca 475  Q
    |||||||||||| |||| |||||||||| |||||||||| |||| ||||| ||||||||||||||||||||||| ||||| || ||||| |||||||    
T  20934885 taattggaaagtgttgttaaagttaataccctcatattcgccatggatttccaaaaacttgagatttggtgcacagatatcaatttgggcgaagcca 20934789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 379 - 477
Target Start/End: Complemental strand, 20953423 - 20953325
Alignment:
Q  379 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatc 477  Q
    |||||| ||||| ||||| ||||||||| |||||||||| ||||  |||| |||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  20953423 taattgaaaagtgttgtcgaagttaataccctcatattcgccatcaatttccaaaaacttgagatttggtgcacgaatattaatttgggtgaaaccatc 20953325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 373
Target Start/End: Original strand, 19987720 - 19987861
Alignment:
Q  234 cattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttc 331  Q
    |||||||||||||||  ||||||||||||| |||||||||  ||| ||| |  ||||||||| |    ||||||| |||||| |||||||||||||||||    
T  19987720 cattttctttccctcttcaccttcaaaaactcaaaaagtgggaaaatttggagcaaaatcttgagctgaaatcatcgcaaattgtcaggaagcaagtttc 19987819  T
Q  332 taggctcatcaagcatcaaatatcaggtaatgtatcatctaa 373  Q
    || |||||| || | | ||| || ||||||||||||||||||    
T  19987820 tacgctcatgaaacgtaaaaaattaggtaatgtatcatctaa 19987861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 12892454 - 12892382
Alignment:
Q  301 aatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaa 373  Q
    |||||||| ||||||||| |||| ||||||||| ||| ||||| | | ||| |||||||||||||||||||||    
T  12892454 aatcattggaaatcgtcatgaagtaagtttctatgctaatcaaacgttaaaaatcaggtaatgtatcatctaa 12892382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 304
Target Start/End: Original strand, 20500422 - 20500534
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatc 291  Q
    ||||||||||| ||| || |||  |||||||| || || ||||||||||||||||  ||| | |||||  ||||||||||| |  |||| ||||||||||    
T  20500422 ctgtttttgtataaaacctatcattccatactgcaagctccattttctttccctcttcacttccaaaattccaaaaagtgcgattttttgggtcaaaatc 20500521  T
Q  292 ttcattccaaatc 304  Q
    |||||| ||||||    
T  20500522 ttcatttcaaatc 20500534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 186 - 379
Target Start/End: Original strand, 54335604 - 54335797
Alignment:
Q  186 cagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtc 285  Q
    ||||||| ||||||||||||||| | |||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  54335604 cagagttactgtttttgtacaaaactcatcagtccatacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaatttttgggtc 54335703  T
Q  286 aaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  54335704 aaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 54335797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 178 - 379
Target Start/End: Complemental strand, 20518246 - 20518045
Alignment:
Q  178 aagtcacacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat 277  Q
    ||||||| |||||||  |||||| ||||||| |||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |    
T  20518246 aagtcacgcagagttaatgttttcgtacaaaacccataagtccatactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaatt 20518147  T
Q  278 tttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 377  Q
    ||| |||||||||| |||| ||||| ||||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||    
T  20518146 tttgggtcaaaatcctcatcccaaagcattgtaaatcgtcatgaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactc 20518047  T
Q  378 at 379  Q
    ||    
T  20518046 at 20518045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 194 - 379
Target Start/End: Complemental strand, 30933976 - 30933791
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| ||||||| | |||  ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| |    
T  30933976 ctgttttcgtacaaaactcattagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaattttttgggtcaaaatcct 30933877  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  30933876 catcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 30933791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 194 - 379
Target Start/End: Original strand, 11916888 - 11917073
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| ||||||| |||| | |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| |    
T  11916888 ctgttttcgtacaaaacccagcagtccatactccaagcaccattttttttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcct 11916987  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  11916988 catcccaaatctttgcaaatcgtcaggaagcaagtttctacgctcatcaagcacaaaatatcaggtattgtatcatcaaaactcat 11917073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 202 - 379
Target Start/End: Original strand, 53767190 - 53767367
Alignment:
Q  202 gtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaa 301  Q
    ||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||  |||| ||||    
T  53767190 gtacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgtaattttttgggtcaaaattctcatcccaa 53767289  T
Q  302 atcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  53767290 atcattgcaaatcgtcatgaagcaagtttctacgctcatcaagcaccaaatatcatgtattgtatcatcaaaactcat 53767367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 30528455 - 30528637
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    |||||||||||||||  |||||  |||||||||||  | ||||||||||||||||||||| |||||||||||||||||| |  |||| | ||||||||||    
T  30528455 ctgtttttgtacaaaatccatcaatccatactccaatcgccattttctttccctccacctccaaaaacccaaaaagtgcgattttttggatcaaaatctt 30528554  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 376  Q
    ||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||| ||||| |||||||||||||    
T  30528555 cattctaaatcattgcaaatcgtcaggaagcaagtttctatactcatcaaacatcaaatatcatgtaatctatcatctaaact 30528637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 202 - 360
Target Start/End: Complemental strand, 14443893 - 14443735
Alignment:
Q  202 gtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaa 301  Q
    ||||||| ||||||  |||| |||||| |||||||||||||||||||||||| |||||||||||||||||| |  |||| |||||||||| |||| ||||    
T  14443893 gtacaaaacccatcattccaaactccaagcaccattttctttccctccacctccaaaaacccaaaaagtgcgattttttcggtcaaaatcctcatcccaa 14443794  T
Q  302 atcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggta 360  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| |||  ||||||||    
T  14443793 atcattgcaaatcgtcaggaagtaagtttctacgctcatcaagcaccaatgatcaggta 14443735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 236 - 365
Target Start/End: Complemental strand, 7666828 - 7666699
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| ||  ||||||||||||||||||||||||||||| |||||||  ||||||||| |    
T  7666828 ttttctttccctccacctccaaaaacccaaaaagtgcgaaatttttgggtaaaatcttcattccaaatcattgcaaatcatcaggaaataagtttctacg 7666729  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    |||||||||||||||| | || ||||||||    
T  7666728 ctcatcaagcatcaaagaacatgtaatgta 7666699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 236 - 376
Target Start/End: Original strand, 19866950 - 19867091
Alignment:
Q  236 ttttctttccctccaccttcaaaaacc-caaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctag 334  Q
    |||||||||||||||||| |||||||| | |||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||||| ||||||||||     
T  19866950 ttttctttccctccacctccaaaaacctccaaaagtgcgaaattttgggtgaaaatcttcattccaaatcattgtaaattgtcaggaaacaagtttctac 19867049  T
Q  335 gctcatcaagcatcaaatatcaggtaatgtatcatctaaact 376  Q
    ||||||||||||||||| | ||||||||||||| || |||||    
T  19867050 gctcatcaagcatcaaagaacaggtaatgtatcgtcaaaact 19867091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 253 - 377
Target Start/End: Complemental strand, 39649827 - 39649703
Alignment:
Q  253 ttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaat 352  Q
    ||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||     
T  39649827 ttcaaaaactccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaag 39649728  T
Q  353 atcaggtaatgtatcatctaaactc 377  Q
    |  |||||||||| |||| ||||||    
T  39649727 aataggtaatgtaccatcaaaactc 39649703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 35995304 - 35995433
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| ||||||||| |||||||  || |||| ||| ||| | || |||||||||||||||||||||||||||| |||||||||| |    
T  35995304 ttttctttccctccacctccaaaaaccccaaaagtgtgaatttttgggtaaaattttttattccaaatcattgcaaatcgtcaggaaacaagtttctacg 35995403  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    |||||||||||||||| | |||||||||||    
T  35995404 ctcatcaagcatcaaagaacaggtaatgta 35995433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 236 - 333
Target Start/End: Complemental strand, 34086700 - 34086603
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttcta 333  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||  |||||||||    
T  34086700 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaataagtttcta 34086603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 366
Target Start/End: Original strand, 35063134 - 35063263
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| |||||| || |||||||| ||||||| ||| |||||||| | |||||||||||||||||||||| ||| |||||||||| |    
T  35063134 ttttctttccctccacctccaaaaatcccaaaagtgcgaaattttgggtaaaaatctttaatccaaatcattgcaaatcgtca-gaaacaagtttctacg 35063232  T
Q  336 ctcatcaagcatcaaatatcaggtaatgtat 366  Q
    ||||||||| |||||| |  |||||||||||    
T  35063233 ctcatcaagtatcaaagaataggtaatgtat 35063263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 178 - 379
Target Start/End: Original strand, 23941577 - 23941778
Alignment:
Q  178 aagtcacacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat 277  Q
    ||||||| ||| ||| ||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  |    
T  23941577 aagtcacgcagtgttactgtttttgtacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaattt 23941676  T
Q  278 tttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 377  Q
    ||| |||||||| | |||| |||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||| ||||||    
T  23941677 tttgggtcaaaaccctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgttcatcaagcaccaaatatcaggtattgtatcatcaaaactc 23941776  T
Q  378 at 379  Q
    ||    
T  23941777 at 23941778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 194 - 379
Target Start/End: Complemental strand, 16315308 - 16315123
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| ||||||| |||||| ||||| ||||||  |||||||||||||||||||||||||| ||||||||||||||| |  |||| | ||||||||||    
T  16315308 ctgttttcgtacaaaacccatcagtccaaactccaaacaccattttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatctt 16315209  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||| ||||||||    
T  16315208 catcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatataaggtattgtatcatcaaaactcat 16315123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 178 - 379
Target Start/End: Original strand, 12063502 - 12063703
Alignment:
Q  178 aagtcacacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat 277  Q
    |||| |||||| ||| ||||||| ||||||| |||||| ||||| |||||| |||||||||||||||||||  |||||||||||||||||||||  |  |    
T  12063502 aagtgacacagtgttactgttttcgtacaaaacccatcagtccaaactccaagcaccattttctttccctcttccttcaaaaacccaaaaagtgtgattt 12063601  T
Q  278 tttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 377  Q
    ||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||| ||||||||| ||||||    
T  12063602 tttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacactcatcaagcactaaatatcaggtattgtatcatcaaaactc 12063701  T
Q  378 at 379  Q
    ||    
T  12063702 at 12063703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 178 - 379
Target Start/End: Complemental strand, 30704504 - 30704303
Alignment:
Q  178 aagtcacacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat 277  Q
    |||| |||||| ||| ||||||| ||||||| | |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |  |    
T  30704504 aagtgacacagtgttactgttttcgtacaaaactcatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgactt 30704405  T
Q  278 tttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 377  Q
    ||| |||||||||  ||||  |||||||||||||||||||||||||||||||||||  ||||| || || |||||||||| || ||||||||| ||||||    
T  30704404 tttgggtcaaaattctcatctcaaatcattgcaaatcgtcaggaagcaagtttctacactcattaaacaccaaatatcagatattgtatcatcaaaactc 30704305  T
Q  378 at 379  Q
    ||    
T  30704304 at 30704303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 236 - 379
Target Start/End: Original strand, 3368237 - 3368380
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| |||||||||||||||||| |   ||| |||||||||||||||||  |||||||||||||| ||||||||||||||||||      
T  3368237 ttttctttccctccacctccaaaaacccaaaaagtgcgattatttgggtcaaaatcttcattcataatcattgcaaatcatcaggaagcaagtttctaca 3368336  T
Q  336 ctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    || ||||||||||||| |||| ||||||||||||| ||||||||    
T  3368337 cttatcaagcatcaaacatcaagtaatgtatcatcaaaactcat 3368380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 48025756 - 48025884
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| ||||| ||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||| ||| ||| |||||||||| |    
T  48025756 ttttctttccctccacctccaaaaccccaaaa-gtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcatcaagaaacaagtttctatg 48025854  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    |||||||||||||||| | |||||||||||    
T  48025855 ctcatcaagcatcaaagaacaggtaatgta 48025884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 25817616 - 25817745
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| |||||||||||||||||  || |||| ||||||||||||| |||||||||||||||||||||||  ||||||||||||  |    
T  25817616 ttttctttccctccacctccaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcgttccaaatcattgcaaatcgtcataaagcaagtttctgcg 25817715  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    ||| |||||||||| | | |||||||||||    
T  25817716 ctcgtcaagcatcatagaacaggtaatgta 25817745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 236 - 365
Target Start/End: Complemental strand, 33403005 - 33402876
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    ||||||||| ||||||||  |||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| || |||| |||||||||| |    
T  33403005 ttttctttcgctccacctctaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcttccggaaacaagtttctacg 33402906  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    ||||| |||||||||| | |||||||||||    
T  33402905 ctcattaagcatcaaagaacaggtaatgta 33402876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 236 - 365
Target Start/End: Complemental strand, 35577385 - 35577256
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||| | ||||||| ||||||||| |||||||| ||||||| ||| |||||  |||||||||||||||||||||||| ||||| |||||||||| |    
T  35577385 ttttcttttcgtccacctccaaaaaccccaaaagtgcgaaatttttggtaaaaatactcattccaaatcattgcaaatcgttaggaaacaagtttctacg 35577286  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    |||||||||||||||| | |||||||||||    
T  35577285 ctcatcaagcatcaaagaacaggtaatgta 35577256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 18426440 - 18426363
Alignment:
Q  300 aaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 377  Q
    |||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||    
T  18426440 aaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaaacgtcaaaaatcagataatgtatcatctaaactc 18426363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 461
Target Start/End: Complemental strand, 3349816 - 3349734
Alignment:
Q  379 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaa 461  Q
    |||||| ||||| |||||||||||||||  |||| ||||| | | |||||  |||||||||||| |||||||| |||||||||    
T  3349816 taattgaaaagtgttgtcaaagttaatactctcaaattcatcttcgatttcaaaaaacttgagacttggtgcatggatattaa 3349734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 4334603 - 4334685
Alignment:
Q  379 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaa 461  Q
    |||||||||||| ||| ||||| ||| | ||||| ||||||||  |||||  ||||||||||||||||||||| | |||||||    
T  4334603 taattggaaagtgttgccaaaggtaacaacctcaaattcaccaacgatttcaaaaaacttgagatttggtgcatgaatattaa 4334685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 2006882 - 2006811
Alignment:
Q  379 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgc 450  Q
    |||||||||||| ||||||||| ||||||||||| ||| ||||  ||| | ||||| ||| |||||||||||    
T  2006882 taattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttaagatttggtgc 2006811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 477
Target Start/End: Original strand, 4322720 - 4322811
Alignment:
Q  386 aaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatc 477  Q
    ||||| ||||||||| ||||| ||||  ||  ||| | |||||  ||||||||||||||||||||| ||||||||| |||||| || |||||    
T  4322720 aaagtgttgtcaaaggtaataccctcgaatagaccttcgatttcaaaaaacttgagatttggtgcatggatattaatttgggttaaaccatc 4322811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 2948064 - 2948146
Alignment:
Q  379 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaa 461  Q
    |||||| ||||| |||||||||||||||  |||| ||||| | | || ||  ||||||||||||||||||||| | |||||||    
T  2948064 taattgaaaagtgttgtcaaagttaatactctcaaattcatcgtcgacttcaaaaaacttgagatttggtgcatgaatattaa 2948146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 178 - 379
Target Start/End: Original strand, 23941285 - 23941486
Alignment:
Q  178 aagtcacacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat 277  Q
    ||||||| ||| ||| ||||||| ||||||| | |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || |    
T  23941285 aagtcacgcagtgttactgttttcgtacaaaactcatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaatt 23941384  T
Q  278 tttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 377  Q
    ||| |||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||    
T  23941385 ttttggtcaaaatcctcatcccaaatcattgcaaatcgtcatgaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactc 23941484  T
Q  378 at 379  Q
    ||    
T  23941485 at 23941486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 218 - 376
Target Start/End: Original strand, 44221991 - 44222149
Alignment:
Q  218 tccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtc 317  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||| |||| ||||||||||||||||||||    
T  44221991 tccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtc 44222090  T
Q  318 aggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 376  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  44222091 aggaagcaagtttctacgctcatcaagcatcaaatatcaggtattgtatcatcaaaact 44222149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 178 - 379
Target Start/End: Original strand, 4278544 - 4278746
Alignment:
Q  178 aagtcacacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat 277  Q
    ||||||| || |||| ||||||| ||||||| |||||| ||| ||||||||  ||||||||||||||||||||||||||||||||| |||||||  || |    
T  4278544 aagtcacgcaaagttactgttttcgtacaaaacccatcagtcgatactccaaacaccattttctttccctccaccttcaaaaaccccaaaagtgagaatt 4278643  T
Q  278 tttaggtcaaaatcttcattccaaatcattgcaaatcgtcagg-aagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 376  Q
    ||| |||||||||| |||| ||||||||||||| ||||||||| ||| ||||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  4278644 ttttggtcaaaatcctcatcccaaatcattgcacatcgtcaggaaagtaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatctaaact 4278743  T
Q  377 cat 379  Q
    |||    
T  4278744 cat 4278746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 194 - 379
Target Start/End: Original strand, 11356297 - 11356482
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| || |||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||  |    
T  11356297 ctgttttcgtgcaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaattct 11356396  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||| ||||||||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||| ||||||||| ||||||||    
T  11356397 catcccaaatcattgcaaatcatcaggaagcaagtttctacgttcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 11356482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 236 - 378
Target Start/End: Complemental strand, 2369797 - 2369655
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    ||||||||||||||||||  ||||||||||||||||  || |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||      
T  2369797 ttttctttccctccacctctaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcattccaaatcattgcaaatcgtcatgaagcaagtttctaca 2369698  T
Q  336 ctcatcaagcatcaaatatcaggtaatgtatcatctaaactca 378  Q
    |||||||||||||||| | ||||||||||||| || |||||||    
T  2369697 ctcatcaagcatcaaagaacaggtaatgtatcctcaaaactca 2369655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 236 - 362
Target Start/End: Complemental strand, 4452521 - 4452395
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    ||||||||||||||| || |||||||||||||||||| || |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||      
T  4452521 ttttctttccctccatctccaaaaacccaaaaagtgcgaatttttgggtcaaaatcttcattccaaataattgcaaatcatcaggaagcaagtttctaca 4452422  T
Q  336 ctcatcaagcatcaaatatcaggtaat 362  Q
     ||||||||||||||| | ||||||||    
T  4452421 ttcatcaagcatcaaagaacaggtaat 4452395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 197 - 379
Target Start/End: Complemental strand, 13070618 - 13070446
Alignment:
Q  197 tttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcat 296  Q
    |||||||| ||| |||| | ||||||| |||| |||||||||||||||||||||||| |||||||||||||||||  |  |||| |||||||||||||||    
T  13070618 tttttgtataaaacccagcagtccatattccaagcaccattttctttccctccacctccaaaaacccaaaaagtgtgattttttgggtcaaaatcttcat 13070519  T
Q  297 tccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    |||||||||          ||| ||||||||||||||  | ||||||||||||||||||||  ||||||||||||||||||||    
T  13070518 tccaaatca----------tcatgaagcaagtttctacacccatcaagcatcaaatatcagacaatgtatcatctaaactcat 13070446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 379
Target Start/End: Original strand, 12868575 - 12868757
Alignment:
Q  198 ttttgtacaaagcccatcggtccatactccatgcaccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaatttta-ggtcaaaatcttc 294  Q
    ||||||||||| ||||||  |||  ||||||  ||||||||||||||| ||  ||||| ||||||||||||| ||||||| ||||  |||||||||||||    
T  12868575 ttttgtacaaaacccatcaatcccaactccaa-caccattttctttccttcttcacctccaaaaacccaaaa-gtgcaaatttttttggtcaaaatcttc 12868672  T
Q  295 attccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||| ||||||||| |||||||| |||||| |||||||||  |||||||||||| ||| ||||| ||||||||||||| |||||||    
T  12868673 atttcaaatcattacaaatcgtgaggaagtaagtttctacactcatcaagcataaaaaatcagataatgtatcatcttaactcat 12868757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 236 - 322
Target Start/End: Complemental strand, 4452843 - 4452757
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaa 322  Q
    |||||||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||| |||||||||| |||||||    
T  4452843 ttttctttccctccacctccaaaaacctaaaaagtgcaaatttttgggtcaaaatcttcattccaaataattgcaaatcatcaggaa 4452757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 223 - 349
Target Start/End: Original strand, 31730894 - 31731021
Alignment:
Q  223 actccatgcaccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcagg 320  Q
    |||||| |||||||||||||||||||  ||||| |||||||||||| ||||| || || | |||||| ||||||||| || |||||||||||||||||||    
T  31730894 actccaagcaccattttctttccctctccacctccaaaaacccaaagagtgcgaa-ttgtgggtcaatatcttcatttcatatcattgcaaatcgtcagg 31730992  T
Q  321 aagcaagtttctaggctcatcaagcatca 349  Q
    |||||||||||||  |||||||| |||||    
T  31730993 aagcaagtttctacactcatcaaacatca 31731021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 379
Target Start/End: Complemental strand, 23562362 - 23562286
Alignment:
Q  303 tcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||||| |||||||| || ||||||||||||| ||||||||||||| ||| |||| |||||||||||| | |||||||    
T  23562362 tcatttcaaatcgttagaaagcaagtttctacgctcatcaagcattaaaaatcaagtaatgtatcattttaactcat 23562286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 2834739 - 2834797
Alignment:
Q  315 gtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaa 373  Q
    |||| |||||||||||||| ||||||||| | ||||| |||||||||||||||||||||    
T  2834739 gtcatgaagcaagtttctacgctcatcaaacgtcaaaaatcaggtaatgtatcatctaa 2834797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 178 - 379
Target Start/End: Original strand, 32910527 - 32910728
Alignment:
Q  178 aagtcacacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat 277  Q
    ||||||| ||||||| ||||||| ||||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |    
T  32910527 aagtcacgcagagttactgttttcgtacaaaacccatcagtccatacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaatt 32910626  T
Q  278 tttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 377  Q
    ||| |||||||||  |||| ||||| ||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||| ||||||||| ||||||    
T  32910627 tttgggtcaaaattctcatcccaaaccattgcaaatcgtcatgaagcaagtttctacactcatcaagcaccaaatatcaggtattgtatcatcaaaactc 32910726  T
Q  378 at 379  Q
    ||    
T  32910727 at 32910728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 194 - 379
Target Start/End: Complemental strand, 29196008 - 29195823
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| ||||||| |||||  ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||| |    
T  29196008 ctgttttcgtacaaaacccattagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcaattttttaggtcaatatcct 29195909  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||| |||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  29195908 catcccaaatcattgcaaatcgtcagaaagcaagtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 29195823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 195 - 379
Target Start/End: Complemental strand, 15235222 - 15235035
Alignment:
Q  195 tgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctcc--accttcaaaaacccaaaaagtgcaaaattttagg-tcaaaatc 291  Q
    |||||||||||||| || ||| |||||||||||| |||||||||| ||||||||   |||| ||||||||||||||||||||  |||| || ||||||||    
T  15235222 tgtttttgtacaaaaccaatcagtccatactccaagcaccattttatttccctctcgacctccaaaaacccaaaaagtgcaatttttttgggtcaaaatc 15235123  T
Q  292 ttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    |||||||||||||||||||||||||||| |||||||||  ||  ||||||||||||||||||||| ||||||||||||||||||||||    
T  15235122 ttcattccaaatcattgcaaatcgtcagaaagcaagttcatacactcatcaagcatcaaatatcaagtaatgtatcatctaaactcat 15235035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 178 - 368
Target Start/End: Complemental strand, 20887864 - 20887674
Alignment:
Q  178 aagtcacacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat 277  Q
    |||| |||||| ||| ||||||| ||||||| |||||| ||||| || ||| |||||||||||||||||| |||||||||||||||||||||||  |  |    
T  20887864 aagtgacacagtgttactgttttcgtacaaaacccatcagtccaaacaccaagcaccattttctttccctacaccttcaaaaacccaaaaagtgggattt 20887765  T
Q  278 tttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatca 368  Q
    |||  ||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||||||||| |||||||    
T  20887764 tttgagtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagaaagtttctacgcttatcaagcaccaaatatcaggtattgtatca 20887674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 236 - 365
Target Start/End: Complemental strand, 30491655 - 30491525
Alignment:
Q  236 ttttctttccctccaccttcaaaaaccca-aaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctag 334  Q
    |||||||||||||||||| |||||||||  |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||  ||||||||||     
T  30491655 ttttctttccctccacctccaaaaacccccaaaagtgcgaaattttgagtcaaaatcttcattccaaatcattgcaaatcgtcaggagacaagtttctac 30491556  T
Q  335 gctcatcaagcatcaaatatcaggtaatgta 365  Q
    ||||||||||||||||| | |||||||||||    
T  30491555 gctcatcaagcatcaaagaacaggtaatgta 30491525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 38739554 - 38739682
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| |||||||||||||||||  || |||| ||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |    
T  38739554 ttttctttccctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtcaggaaacaag-ttctacg 38739652  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    |||||||||||||||| | |||||||||||    
T  38739653 ctcatcaagcatcaaagaacaggtaatgta 38739682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 236 - 376
Target Start/End: Complemental strand, 34017538 - 34017398
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    ||||||||| |||||||| ||||||  | |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||| |    
T  34017538 ttttctttcactccacctccaaaaattccaaaagtgcaaaattttgggtaaaaatcttcatttcaaatcattgcaaatcgtcaggaaacaagtttctacg 34017439  T
Q  336 ctcatcaagcatcaaatatcaggtaatgtatcatctaaact 376  Q
    |||||||||||||||| | || |||||||||| || |||||    
T  34017438 ctcatcaagcatcaaagaacatgtaatgtatcgtcaaaact 34017398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 236 - 365
Target Start/End: Complemental strand, 763243 - 763115
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    ||||||||||||||||||||||||  |||||| |||| ||||||| | | ||||||||||||||||||||||||||||||| ||||| ||| |||||| |    
T  763243 ttttctttccctccaccttcaaaattccaaaa-gtgcgaaattttggataaaaatcttcattccaaatcattgcaaatcgttaggaaacaaatttctacg 763145  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    |||||||||||||||| |  ||||||||||    
T  763144 ctcatcaagcatcaaagaataggtaatgta 763115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 376
Target Start/End: Original strand, 5504930 - 5505069
Alignment:
Q  233 ccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttct 332  Q
    ||||||| ||||||||||||| ||||||| | |||||||||||||||| ||| |||||||||||    ||||||||||||||||||| || || ||||||    
T  5504930 ccattttttttccctccacctccaaaaactccaaaagtgcaaaattttgggtaaaaatcttcat----aatcattgcaaatcgtcagaaaacaggtttct 5505025  T
Q  333 aggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 376  Q
    | |||||||||| |||||| | ||||||||||| |||| |||||    
T  5505026 acgctcatcaagaatcaaagaacaggtaatgtaccatcaaaact 5505069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 194 - 318
Target Start/End: Complemental strand, 35050432 - 35050308
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| ||||||| | |||| ||||| |||||| |||||||||||||||||||||||||||||||   ||||||| | |  |||| |||||||||| |    
T  35050432 ctgttttcgtacaaaactcatcagtccagactccaagcaccattttctttccctccaccttcaaaaataaaaaaagtacgattttttgggtcaaaatcct 35050333  T
Q  294 cattccaaatcattgcaaatcgtca 318  Q
    ||| |||||||||||||||||||||    
T  35050332 catcccaaatcattgcaaatcgtca 35050308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 331
Target Start/End: Complemental strand, 33144043 - 33143948
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttc 331  Q
    |||||||||||||||||| ||||| ||| |||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||| || ||||||||    
T  33144043 ttttctttccctccacctccaaaacccccaaaaatgcgaaattttgggtgaaaatcttcattccaaatcattgcaaatcgtcagaaaacaagtttc 33143948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 236 - 321
Target Start/End: Original strand, 16109319 - 16109403
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcagga 321  Q
    |||||||||||||||||| |||||||||||||||||| |  |||| |||||||||||||||||||||| |||| ||||||||||||    
T  16109319 ttttctttccctccacctccaaaaacccaaaaagtgcgattttttgggtcaaaatcttcattccaaattattg-aaatcgtcagga 16109403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 8736555 - 8736460
Alignment:
Q  231 caccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagc 324  Q
    |||| |||||||||||||  ||||| ||||||||||||||||||||| ||||   |||||||||||||| |||||||||||||||| |||||||||    
T  8736555 cacccttttctttccctctccacctccaaaaacccaaaaagtgcaaatttttgaatcaaaatcttcatttcaaatcattgcaaatcatcaggaagc 8736460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 23276021 - 23276095
Alignment:
Q  299 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaa 373  Q
    |||||||||| ||| ||| ||||||||||||||||  ||||| || | ||||| || | ||||||||||||||||    
T  23276021 caaatcattggaaaacgttaggaagcaagtttctacactcataaaacgtcaaaaattatgtaatgtatcatctaa 23276095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 194 - 379
Target Start/End: Original strand, 8639 - 8824
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| ||||||| |||| | |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| |    
T  8639 ctgttttcgtacaaaacccagcagtccatactccaagcaccattttttttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcct 8738  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  8739 catcccaaatctttgcaaatcgtcaggaagcaagtttctacgctcatcaagcacaaaatatcaggtattgtatcatcaaaactcat 8824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 194 - 379
Target Start/End: Complemental strand, 50008978 - 50008793
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| ||||||| |||||| ||||| |||| | ||||||||||||||||||| ||||||||||||| ||||||||| |  |||| |||||||||| |    
T  50008978 ctgttttcgtacaaaacccatcagtccaaactcgaagcaccattttctttccctcgaccttcaaaaaccaaaaaagtgcgattttttgggtcaaaatcct 50008879  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  50008878 catcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 50008793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 194 - 379
Target Start/End: Complemental strand, 50336373 - 50336188
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| ||||||| |||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||| |    
T  50336373 ctgttttcgtacaaaacccatcagtccaaacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcct 50336274  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||| ||||| ||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  50336273 catcccaaaccattgcaaatcgtcatgaagcaagtttctatgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 50336188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 230 - 364
Target Start/End: Complemental strand, 22182286 - 22182152
Alignment:
Q  230 gcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtt 329  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  22182286 gcaccattttctttccctccacctccaaaaacccaaaaagtgcaattttttaggtcaaaatcttcattccaaatcattgcaaatcgttaagaagcaagtt 22182187  T
Q  330 tctaggctcatcaagcatcaaatatcaggtaatgt 364  Q
    |||| ||||||||||||||||||||||||||||||    
T  22182186 tctacgctcatcaagcatcaaatatcaggtaatgt 22182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 194 - 379
Target Start/End: Original strand, 33990720 - 33990905
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| ||||||| |||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |  |||| |||||||||| |    
T  33990720 ctgttttcgtacaaaacccatcagtccaaactccaagcaccattttctttccttccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcct 33990819  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||| ||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  33990820 catcccaaatcattgcaaatcgtcatgaatcaagtttctacgctcatcaagcaccaaatatcaagtattgtatcatcaaaactcat 33990905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 194 - 379
Target Start/End: Complemental strand, 43210171 - 43209986
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| ||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||||  |||||||| |  |||| |||||||||| |    
T  43210171 ctgttttcgtacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacc--aaaagtgcgattttttgggtcaaaatcct 43210074  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcagg--taatgtatcatctaaactcat 379  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  || ||||||||| ||||||||    
T  43210073 catcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtatattgtatcatcaaaactcat 43209986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 203 - 379
Target Start/End: Original strand, 41418878 - 41419054
Alignment:
Q  203 tacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaa 302  Q
    |||||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||| |||| |||||    
T  41418878 tacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaa 41418977  T
Q  303 tcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||||| |||||||| |||| ||||||||||| |||||||||||| ||||||||||||| ||||||||  ||||||||    
T  41418978 tcattacaaatcgttaggacgcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcataaaaactcat 41419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 178 - 333
Target Start/End: Complemental strand, 157043 - 156888
Alignment:
Q  178 aagtcacacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat 277  Q
    ||||||| ||| ||| ||||||| |||||||  ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || |    
T  157043 aagtcacgcagtgttactgttttcgtacaaaatccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaatt 156944  T
Q  278 tttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttcta 333  Q
    ||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  156943 tttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttcta 156888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 24972607 - 24972736
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  24972607 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 24972706  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    |||||||||||||||||| |||||||||||    
T  24972707 ctcatcaagcatcaaataacaggtaatgta 24972736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 1938538 - 1938702
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| | ||||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||| |    
T  1938538 ctgttttcgcacaaaacccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcct 1938637  T
Q  294 cattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcagg 358  Q
    ||| |||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||| ||||    
T  1938638 catcccaaatcattgcaaatcgtcagaaagaaagtttctatgctcatcaagcaccaaataccagg 1938702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 194 - 379
Target Start/End: Original strand, 12656473 - 12656665
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat-------tttaggtca 286  Q
    ||||||| |||||||  ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || |       ||| |||||    
T  12656473 ctgttttcgtacaaaatccatcagtccaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaagtgcgattttttgggtca 12656572  T
Q  287 aaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||||| | || |||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  12656573 aaatccttatcccaaatcattgcaaatcgtcagaaagcaagtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 12656665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 23283379 - 23283508
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |    
T  23283379 ttttctttccctccacctccaaaaaccccaaaagtgcaaaattttgggtaaaaatcttcattctaaatcattgcaaatcgtcaggaaacaagtttctacg 23283478  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    |||||||||||||||| | |||||||||||    
T  23283479 ctcatcaagcatcaaagaacaggtaatgta 23283508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 36499124 - 36499250
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |    
T  36499124 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaaatttctacg 36499223  T
Q  336 ctcatcaagcatcaaatatcaggtaat 362  Q
    |||||||||||||||| | ||||||||    
T  36499224 ctcatcaagcatcaaagaacaggtaat 36499250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 236 - 351
Target Start/End: Original strand, 55523943 - 55524058
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||||||| |||||||||| |    
T  55523943 ttttctttccctccacctgcaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgtaaatcgtcaggaaacaagtttctacg 55524042  T
Q  336 ctcatcaagcatcaaa 351  Q
    ||||||||||||||||    
T  55524043 ctcatcaagcatcaaa 55524058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 236 - 343
Target Start/End: Original strand, 12586403 - 12586510
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||| |    
T  12586403 ttttctttccctccacctccaaaaaccccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaataagtttctacg 12586502  T
Q  336 ctcatcaa 343  Q
    ||||||||    
T  12586503 ctcatcaa 12586510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 240 - 379
Target Start/End: Complemental strand, 45246888 - 45246749
Alignment:
Q  240 ctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctca 339  Q
    |||||||||||||| ||||||| | |||||||  ||||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||| | |||||    
T  45246888 ctttccctccacctccaaaaactctaaaagtgtgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaagaaacaagtttccacgctca 45246789  T
Q  340 tcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    |||||||||||| | ||||||||||| | || ||||||||    
T  45246788 tcaagcatcaaagaacaggtaatgtaccgtcaaaactcat 45246749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 5534257 - 5534180
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtg 271  Q
    ||||||| ||||||| |||||  || || |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5534257 ctgttttcgtacaaaacccattagtgcaaactccaagcaccattttctttccctccaccttcaaaaacccaaaaagtg 5534180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 234 - 347
Target Start/End: Complemental strand, 6599486 - 6599370
Alignment:
Q  234 cattttctttccctcc--accttcaaaaaccca-aaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagttt 330  Q
    |||||||||||||| |  |||| |||||||||  |||| ||| || |||| ||| |||||||||||| ||||||||||||| ||||||||||||| ||||    
T  6599486 cattttctttccctactcacctccaaaaacccccaaaaatgcgaattttttggtaaaaatcttcatttcaaatcattgcaagtcgtcaggaagcaggttt 6599387  T
Q  331 ctaggctcatcaagcat 347  Q
    ||| ||| |||||||||    
T  6599386 ctatgcttatcaagcat 6599370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 24904326 - 24904254
Alignment:
Q  299 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatct 371  Q
    |||||||||  ||| | ||| |||||||||||||| ||||||||| | ||||| |||| ||||||| ||||||    
T  24904326 caaatcattaaaaaacatcatgaagcaagtttctacgctcatcaaacgtcaaaaatcaagtaatgtgtcatct 24904254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 197 - 379
Target Start/End: Complemental strand, 13868358 - 13868174
Alignment:
Q  197 tttttgtacaaagcccatcggtccatactccatgcaccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttc 294  Q
    |||| ||||||| |||||| ||||| |||| | |||||||||||||||||||  ||||| ||||||| ||||||||||||| |||| ||||||| |||||    
T  13868358 ttttggtacaaaacccatcagtccaaactctaagcaccattttctttccctctccacctccaaaaactcaaaaagtgcaaatttttgggtcaaattcttc 13868259  T
Q  295 attccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||| ||||||||||||||||||  ||||| |||||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  13868258 atttcaaatcattgcaaatcgtggggaagtaagtttctacactcatcaagcatcaaatattaggtaatgtatcatctaaactcat 13868174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 218 - 379
Target Start/End: Original strand, 32075008 - 32075168
Alignment:
Q  218 tccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtc 317  Q
    ||||||||||| ||||||||||| ||||| |||||||  || || |||||||||  || |||| |||||||||| |||| ||||||||||| ||||| ||    
T  32075008 tccatactccaagcaccattttcattccc-ccaccttttaagactcaaaaagtgtgaatttttgggtcaaaatcctcatcccaaatcattgtaaatcatc 32075106  T
Q  318 aggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32075107 aggaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 32075168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 181 - 379
Target Start/End: Complemental strand, 24626228 - 24626034
Alignment:
Q  181 tcacacagagttg-ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattt 279  Q
    ||||||||||||  |||||||| |||||| | |||  ||||||||| |||  |||||||||||||||| ||||| ||||||| ||||||||||||  |||    
T  24626228 tcacacagagtttactgtttttatacaaaactcattagtccatacttcataaaccattttctttccctgcacctccaaaaacacaaaaagtgcaattttt 24626129  T
Q  280 taggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    | ||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||     |||||| |||||||||||| |||||||||    
T  24626128 tgggtaaaaatcttcattccaaatcattgcaaatcatcatgaagcaagtttctacgctcatcaagc-----atatcaagtaatgtatcatgtaaactcat 24626034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 194 - 379
Target Start/End: Complemental strand, 2807338 - 2807153
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccatttt-ctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatct 292  Q
    ||||||||||||||| |||  | ||||||| ||   |||||||||| |||||||||||||| | |||||||||||||| |||  |||| |||||||||||    
T  2807338 ctgtttttgtacaaaacccggcagtccatattcaccgcaccatttttctttccctccacct-ctaaaacccaaaaagtacaattttttgggtcaaaatct 2807240  T
Q  293 tcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    |||||  ||||||||||||||||| ||||||||||||  || |||| |||| ||||||| | |||||||||||||||| ||||||||    
T  2807239 tcatttgaaatcattgcaaatcgttaggaagcaagttcttacgctcgtcaaacatcaaagaacaggtaatgtatcatcaaaactcat 2807153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 186 - 290
Target Start/End: Complemental strand, 20534471 - 20534367
Alignment:
Q  186 cagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtc 285  Q
    ||||||| ||||||||||||||| ||||||  |||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  20534471 cagagttactgtttttgtacaaaccccatcattccatacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgaaattttgggtc 20534372  T
Q  286 aaaat 290  Q
    |||||    
T  20534371 aaaat 20534367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 231 - 379
Target Start/End: Original strand, 14189775 - 14189925
Alignment:
Q  231 caccattttctttccctcc--accttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagt 328  Q
    |||||||||||||||||||  |||| ||||| | |||||||||  |  |||| |||||||||||||||| |||||||||||||||||| |||||| ||||    
T  14189775 caccattttctttccctccctacctccaaaatctcaaaaagtgtgattttttgggtcaaaatcttcatttcaaatcattgcaaatcgttaggaagaaagt 14189874  T
Q  329 ttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    | ||| ||||||||||||| ||| |||||||||| |||||||| |||||||    
T  14189875 tactacgctcatcaagcataaaaaatcaggtaatatatcatcttaactcat 14189925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 379
Target Start/End: Complemental strand, 20532180 - 20532087
Alignment:
Q  286 aaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||||| |||||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  20532180 aaaattttcattccaaatcattgcaaattgtatggaagcaagtttctacgctcatcaagcatcaaataccaggtaatgtatcatctaaactcat 20532087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 22661841 - 22661938
Alignment:
Q  178 aagtcacacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaa 275  Q
    ||||||| ||||||| ||||||| ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  22661841 aagtcacgcagagttactgttttcgtacaaaacccatcagtccatactccaagcaccattttctttccctccaccttcaaaaacgcaaaaagtgcaaa 22661938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 365
Target Start/End: Original strand, 34276417 - 34276538
Alignment:
Q  244 ccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaa 343  Q
    |||||||||| ||||||||| ||||| |  ||||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||    
T  34276417 ccctccacctccaaaaaccccaaaagagagaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcatgaaacaagtttctacgcccatcaa 34276516  T
Q  344 gcatcaaatatcaggtaatgta 365  Q
     ||||||| | ||||| |||||    
T  34276517 ccatcaaagaacaggtgatgta 34276538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 41601078 - 41601191
Alignment:
Q  194 ctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatctt 293  Q
    ||||||| |||||||  |||||| |||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||| |    
T  41601078 ctgttttcgtacaaaatccatcgatccaaacttcaagcaccattttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcct 41601177  T
Q  294 cattccaaatcatt 307  Q
    ||| ||||||||||    
T  41601178 catcccaaatcatt 41601191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 232 - 379
Target Start/End: Complemental strand, 27188323 - 27188174
Alignment:
Q  232 accattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtt 329  Q
    |||| ||||||||||||  || || |||||| | ||||| |||||  |||| ||| |||||||||||| ||||||||||| |||||||||||||||| ||    
T  27188323 accactttctttccctcttcaactccaaaaagctaaaaaatgcaattttttgggttaaaatcttcatttcaaatcattgctaatcgtcaggaagcaaatt 27188224  T
Q  330 tctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    || | || |||||| ||| ||| ||||||||||||||||||| |||||||    
T  27188223 tccacgcccatcaatcataaaaaatcaggtaatgtatcatcttaactcat 27188174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 22661933 - 22662005
Alignment:
Q  307 tgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 379  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||| ||||||||| ||||||||    
T  22661933 tgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaagtattaggtattgtatcatcaaaactcat 22662005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 23502645 - 23502679
Alignment:
Q  6 atgctgaggtggctagtggtaaaacagaattgcca 40  Q
    |||||||||||||||||||||||||||||||||||    
T  23502645 atgctgaggtggctagtggtaaaacagaattgcca 23502679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 33228335 - 33228371
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgc 272  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  33228335 ttttcttttcctccacctccaaaaacccaaaaagtgc 33228371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 178 - 379
Target Start/End: Original strand, 2003 - 2205
Alignment:
Q  178 aagtcacacagagttgctgtttttgtacaaagcccatcggtccatactccatgcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaat 277  Q
    ||||||| ||||||| ||||||| || |||| |||||| ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |  |    
T  2003 aagtcacgcagagttactgttttcgtgcaaaacccatcagtccatactccaaacaccattttctttccctccacctttaaaaacccaaaaagtgcgattt 2102  T
Q  278 tttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctaggct-catcaagcatcaaatatcaggtaatgtatcatctaaact 376  Q
    ||| ||| |||||  ||||   |||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||||||| ||||||||| |||||    
T  2103 tttgggtaaaaatgctcatcttaaatcattgcaaatcgtcaggaagcaagtttctacgctccatcaaccaccaaatatcaggtattgtatcatcaaaact 2202  T
Q  377 cat 379  Q
    |||    
T  2203 cat 2205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 236 - 365
Target Start/End: Complemental strand, 31522484 - 31522355
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||||| |    
T  31522484 ttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttaattccaaatcattgcaaatcgtcaggaaacaagtttctatg 31522385  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    |||||||||||||||| | |||||||||||    
T  31522384 ctcatcaagcatcaaagaacaggtaatgta 31522355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 230 - 368
Target Start/End: Complemental strand, 13543798 - 13543661
Alignment:
Q  230 gcaccattttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtt 329  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||  |||| |||||||||||| |||||||||||||||||||||  |||||||||| |    
T  13543798 gcaccattttctttccctccacctccaaaaacccaaaaggtgcaatttttt-ggtcaaaatctttattccaaatcattgcaaatcggtaggaagcaagct 13543700  T
Q  330 tctaggctcatcaagcatcaaatatcaggtaatgtatca 368  Q
    |||| |||||||||||||||||||| ||||||| |||||    
T  13543699 tctacgctcatcaagcatcaaatattaggtaatctatca 13543661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 236 - 365
Target Start/End: Complemental strand, 32275682 - 32275553
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||| ||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||| |||||| |    
T  32275682 ttttcttttcctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatctttgcaaatcgtcaggaaacaaatttctacg 32275583  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    |||||||||||||||| | || ||||||||    
T  32275582 ctcatcaagcatcaaagaacatgtaatgta 32275553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 197 - 343
Target Start/End: Original strand, 8518467 - 8518615
Alignment:
Q  197 tttttgtacaaagcccatcggtccatactccatgcaccattttctttccctc--caccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttc 294  Q
    |||| ||||||| |||||  ||||  ||| || |||||||||| ||||||||  |||||  |||||||||||||||||||| ||||| ||||||||| ||    
T  8518467 ttttggtacaaaacccattagtcccaacttcaagcaccattttttttccctcttcacctctaaaaacccaaaaagtgcaaatttttatgtcaaaatcatc 8518566  T
Q  295 attccaaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaa 343  Q
    ||| ||||||||||  ||||||  ||||||||||||||| | |||||||    
T  8518567 atttcaaatcattgttaatcgttgggaagcaagtttctacgttcatcaa 8518615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 4321632 - 4321590
Alignment:
Q  265 aaaagtgcaaaattttaggtcaaaatcttcattccaaatcatt 307  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  4321632 aaaagtgcaaaattttgggtaaaaatcttcattccaaatcatt 4321590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 7452489 - 7452450
Alignment:
Q  231 caccattttctttccctccaccttcaaaaacccaaaaagt 270  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  7452489 caccattttctttccctccacctccaaaaaccaaaaaagt 7452450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 7452410 - 7452361
Alignment:
Q  319 ggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatca 368  Q
    |||||| | ||||||  |||||||| ||||||||||||||||||||||||    
T  7452410 ggaagctaatttctacactcatcaaacatcaaatatcaggtaatgtatca 7452361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 4321580 - 4321528
Alignment:
Q  325 aagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 377  Q
    ||||||||| ||||||||| ||||||| | ||||||||||| |||| ||||||    
T  4321580 aagtttctacgctcatcaatcatcaaagaacaggtaatgtaccatcaaaactc 4321528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 236 - 351
Target Start/End: Complemental strand, 38248 - 38133
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
    |||||||||||||||||| |||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  38248 ttttctttccctccacctccaaaaagccaaaaagtgcaaatttttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 38149  T
Q  336 ctcatcaagcatcaaa 351  Q
    ||||||||||||||||    
T  38148 ctcatcaagcatcaaa 38133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 1643 - 1772
Alignment:
Q  236 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctagg 335  Q
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T  1643 ttttctttccctccacctccaaaaaccccaaaagtgcgaatttttgggcaaaaatctttattccaaatcattgcaaatcgtcaggaaacaagtttctacg 1742  T
Q  336 ctcatcaagcatcaaatatcaggtaatgta 365  Q
    ||||||||||||| || | || ||||||||    
T  1743 ctcatcaagcatcgaagaacatgtaatgta 1772  T

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