View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1795_high_1 (Length: 403)

Name: NF1795_high_1
Description: NF1795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1795_high_1
NF1795_high_1
[»] chr4 (1 HSPs)
chr4 (1-403)||(6888042-6888449)


Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 6888449 - 6888042
Alignment:
Q  1 ttcttatctttatattttatgtctaaaaagaaatatcattaactattgtgttataaccacaatttcaatgaagagcttttctatttccattgtcaatgag 100  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6888449 ttcttatctttatgttttttgtctacaaagaaatatcattaactattgtgttataaccacaatttcaatgaagagcttttctatttccattgtcaatgag 6888350  T
Q  101 aaaagaaaatgaaagatagtcttctaattttggaacaaaactaatcccttgtactgtagttcattattctgcatgtggacaacagtacttgttcaaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6888349 aaaagaaaatgaaagatagtcttctaattttggaacaaaactaatcccttgtactgtagttcattattctgcatgtggacaacagtacttgttcaaattg 6888250  T
Q  201 acatcatcttctgatatacacatcaaagtaacgtggaaattaatcactgtttcagaatttcaaatagtgaaagagagagaatgtaccgtgagtaaaaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6888249 acatcatcttctgatatacacatcaaagtaacgtggaaattaatcactgtttcagaatttcaaatagtgaaagagagagaaagtaccgtgagtaaaaaat 6888150  T
Q  301 tgttttaatttac-----actatcattctgcatggtccgtctttcacgcagtcagtacatcgatgatcgttcgatcaaaattaaacggtttaaataaggt 395  Q
    |||||||| ||||     |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||    
T  6888149 tgttttaaattacggattactatcattctgcatgatccgtctttcacgcagtcaatacatcgatgatcgttcgatcataattaaacagtttaaataaggt 6888050  T
Q  396 tgatttta 403  Q
    ||||||||    
T  6888049 tgatttta 6888042  T

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