View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1795_high_2 (Length: 363)
Name: NF1795_high_2
Description: NF1795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1795_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 23 - 355
Target Start/End: Complemental strand, 44542094 - 44541762
Alignment:
| Q |
23 |
tcacatacactgacgaagatacctcaaaagcaactgagactacctcccttgatcacaaggaagggctgatagaacaagaattcaagaaatattactgtga |
122 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44542094 |
tcacatacaccgacgaagatacctcaaaagcaactgagactacctcccttgatgacaaggaagggctgatagaacaagaattcaagaaatattactgtga |
44541995 |
T |
|
| Q |
123 |
aagcaatgtttgcagtgacttatatgcaaacgatggttcacgctatgttggaaatgaagatgcagtacaaaaagaagcaattttgaacgaaacagtgaat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44541994 |
aagcaatgtttgcagtgacttatatgcaaacgatggttcacgctatgttggaaatgaagatgcagtacaaaaagaagcaattttgaacgaaacagcgaat |
44541895 |
T |
|
| Q |
223 |
ttcactatgctgcaaaaggaacaaccatcaatattgacatcatgggttatgcccatgctgatgttaggattgctaatgctcctagttctgctgacccgtg |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44541894 |
ttcactatgctgcaaaaggaacaaccatcaatattgacatcctgggttatgcccatgctgatgttaggattgctaatgctcctagttctgctgacccgtg |
44541795 |
T |
|
| Q |
323 |
gcttacaggaatctcttaatgtttttgatgatg |
355 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
44541794 |
gcttacaggaatctcttaatgttcttgatgatg |
44541762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University