View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1795_low_1 (Length: 760)
Name: NF1795_low_1
Description: NF1795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1795_low_1 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 592; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 12 - 687
Target Start/End: Complemental strand, 37637067 - 37636392
Alignment:
| Q |
12 |
catcatcatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggt |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37637067 |
catcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggt |
37636968 |
T |
|
| Q |
112 |
ggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattc |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37636967 |
ggttattctttctttgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaaccttctggatgccatcagcagacacacaattc |
37636868 |
T |
|
| Q |
212 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacttgggaca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37636867 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacctgggaca |
37636768 |
T |
|
| Q |
312 |
acaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtattgtcaaggatatgcca |
411 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37636767 |
acaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtatcgtcaaggatatgcca |
37636668 |
T |
|
| Q |
412 |
aggcctccaccacaatacgtttagagtgttgtttgaagttactcatttatctctatgtcatgagcttcatgtaattgttagcactaagtcatacagattc |
511 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
37636667 |
aggcctccaccaaaatacgtttagagtgttgtttgaaattacttatttctctctatgtcgtgagcttcatgtgattgttagcactaagtcatagagattc |
37636568 |
T |
|
| Q |
512 |
attatattgtatgttatctattggttgatttatatatagtcaactttttactatatttaattattcaattttccccttaattgatattaacatttcttaa |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37636567 |
attatattgtatgttatctattggttgatttatatataatcaaccttttactatatttaattattcaattttccccttaattgatattaacatttattaa |
37636468 |
T |
|
| Q |
612 |
attcttcttcccaatatttatcgtactatttctcattatgtgtttctttgacatttcgataatttgaaaattaata |
687 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
37636467 |
attcttcttcccaatatttctcgtactatttctcattatgagcttctttgacatttcgataatttgaaaattaata |
37636392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 12 - 687
Target Start/End: Complemental strand, 37639981 - 37639306
Alignment:
| Q |
12 |
catcatcatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggt |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37639981 |
catcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggt |
37639882 |
T |
|
| Q |
112 |
ggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattc |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639881 |
ggttattctttctttgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattc |
37639782 |
T |
|
| Q |
212 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacttgggaca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37639781 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacctgggaca |
37639682 |
T |
|
| Q |
312 |
acaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtattgtcaaggatatgcca |
411 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37639681 |
acaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtatcgtcaaggatatgcca |
37639582 |
T |
|
| Q |
412 |
aggcctccaccacaatacgtttagagtgttgtttgaagttactcatttatctctatgtcatgagcttcatgtaattgttagcactaagtcatacagattc |
511 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
37639581 |
aggcctccaccaaaatacgtttagagtgttgtttgaaattactcatttctctctatgtcgtgagcttcatgtgattgttaacactaagtcatagagattc |
37639482 |
T |
|
| Q |
512 |
attatattgtatgttatctattggttgatttatatatagtcaactttttactatatttaattattcaattttccccttaattgatattaacatttcttaa |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37639481 |
attatattgtatgttatctattggttgatttatatataatcaaccttttactatatttaattattcaattttccccttaattgatattaacatttattaa |
37639382 |
T |
|
| Q |
612 |
attcttcttcccaatatttatcgtactatttctcattatgtgtttctttgacatttcgataatttgaaaattaata |
687 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
37639381 |
attcttcttcccaatatttctcgtactatttctcattttgagcttctttgacatttcgataatttgaaaattaata |
37639306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 12 - 687
Target Start/End: Complemental strand, 37645355 - 37644680
Alignment:
| Q |
12 |
catcatcatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggt |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645355 |
catcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgaaatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggt |
37645256 |
T |
|
| Q |
112 |
ggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645255 |
ggttattctttcttcgccgtcgctggtgagccaggtacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattc |
37645156 |
T |
|
| Q |
212 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacttgggaca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37645155 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacctgggaca |
37645056 |
T |
|
| Q |
312 |
acaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtattgtcaaggatatgcca |
411 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37645055 |
acaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtatcgtcaaggatatgcca |
37644956 |
T |
|
| Q |
412 |
aggcctccaccacaatacgtttagagtgttgtttgaagttactcatttatctctatgtcatgagcttcatgtaattgttagcactaagtcatacagattc |
511 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
37644955 |
aggcctccaccaaaatacgtttagagtgttgtttgaaattacttatttctctctatgtcgtgagcttcatgtgattgttagcactaagtcatagagattc |
37644856 |
T |
|
| Q |
512 |
attatattgtatgttatctattggttgatttatatatagtcaactttttactatatttaattattcaattttccccttaattgatattaacatttcttaa |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
37644855 |
attatattgtatgttatctattggttgatttatatataatcaaccttttactatatttaattattcaattttccccttaattgattttaacatttattaa |
37644756 |
T |
|
| Q |
612 |
attcttcttcccaatatttatcgtactatttctcattatgtgtttctttgacatttcgataatttgaaaattaata |
687 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
37644755 |
attcttcttcccaatatttctcgtactatttctcattatgagcttctttgacatttcgataatttgaaaattaata |
37644680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 12 - 687
Target Start/End: Complemental strand, 37648268 - 37647593
Alignment:
| Q |
12 |
catcatcatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggt |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37648268 |
catcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggt |
37648169 |
T |
|
| Q |
112 |
ggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattc |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648168 |
ggttattctttctttgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattc |
37648069 |
T |
|
| Q |
212 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacttgggaca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37648068 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacctgggaca |
37647969 |
T |
|
| Q |
312 |
acaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtattgtcaaggatatgcca |
411 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
37647968 |
acaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtatcgttaaggatatgcca |
37647869 |
T |
|
| Q |
412 |
aggcctccaccacaatacgtttagagtgttgtttgaagttactcatttatctctatgtcatgagcttcatgtaattgttagcactaagtcatacagattc |
511 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
37647868 |
aggcctccaccaaaatacgtttagagtgttgtttgaaattactcatttctctctatgtcgtgagcttcatgtgattgttagcactaagtcatagagattc |
37647769 |
T |
|
| Q |
512 |
attatattgtatgttatctattggttgatttatatatagtcaactttttactatatttaattattcaattttccccttaattgatattaacatttcttaa |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37647768 |
attatattgtatgttatctattggttgatttatatataatcgaccttttactatatttaattattcaattttccccttaattgatattaacatttattaa |
37647669 |
T |
|
| Q |
612 |
attcttcttcccaatatttatcgtactatttctcattatgtgtttctttgacatttcgataatttgaaaattaata |
687 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
37647668 |
attcttcttcccaatatttctcgtactatttctcattttgagcttctttgacatttcgataatttgaaaattaata |
37647593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 12 - 687
Target Start/End: Complemental strand, 37651180 - 37650505
Alignment:
| Q |
12 |
catcatcatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggt |
111 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37651180 |
catcaccattgcacctaatgtcatgcaaactactttccgtaccttcattgaaatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggt |
37651081 |
T |
|
| Q |
112 |
ggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattc |
211 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37651080 |
ggttattctttcttcgtcgtcgctggtgagccaggtacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattc |
37650981 |
T |
|
| Q |
212 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacttgggaca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37650980 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacctgggaca |
37650881 |
T |
|
| Q |
312 |
acaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtattgtcaaggatatgcca |
411 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37650880 |
acaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtatcgtcaaggatatgcca |
37650781 |
T |
|
| Q |
412 |
aggcctccaccacaatacgtttagagtgttgtttgaagttactcatttatctctatgtcatgagcttcatgtaattgttagcactaagtcatacagattc |
511 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
37650780 |
aggcctccaccaaaatacgtttagagcgttgtttgaaattactcatttctctctatgtcgtgagcttcatgtgattgttagcactaagtcatagagattc |
37650681 |
T |
|
| Q |
512 |
attatattgtatgttatctattggttgatttatatatagtcaactttttactatatttaattattcaattttccccttaattgatattaacatttcttaa |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37650680 |
attatattgtatgttatctattggttgatttatatataatcgaccttttactatatttaattattcaattttccccttaattgatattaacatttattaa |
37650581 |
T |
|
| Q |
612 |
attcttcttcccaatatttatcgtactatttctcattatgtgtttctttgacatttcgataatttgaaaattaata |
687 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
37650580 |
attcttcttcccaatatttctcgtactatttctcattatgagcttctttgacatttcgataatttgaaaattaata |
37650505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 12 - 692
Target Start/End: Complemental strand, 37634153 - 37633472
Alignment:
| Q |
12 |
catcatcatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggt |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37634153 |
catcaccatcgcacctaatgtcatgcaaactactttccgtaccttcattgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggt |
37634054 |
T |
|
| Q |
112 |
ggttattctttcttcgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattc |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634053 |
ggttattctttctttgccgtcgctggtgagccaggaacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattc |
37633954 |
T |
|
| Q |
212 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacttgggaca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37633953 |
aggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagcaccgttacctgggaca |
37633854 |
T |
|
| Q |
312 |
acaactctatctcagtgttgaatcaaaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtattgtcaaggatatgcca |
411 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37633853 |
acaactttatctcagtgttgaatcagaagaaaagtctactagggatgaatacaaccttcctgagactcaacttgtttgcggtatcgtcaaggatatgcca |
37633754 |
T |
|
| Q |
412 |
aggcctccaccacaatacgtttagagtgttgtttgaagttactcatttatctctatgtcatgagcttcatgtaattgttagcactaagtcatacagattc |
511 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
37633753 |
aggcctccaccaaaatacgtttagagtgttgtttgaaattactcatttctctctatgtcgtgagcttcatgtgattgttagcactaagtcatagagattc |
37633654 |
T |
|
| Q |
512 |
attatattgtatgttatctattggttgatttatatatagtcaa-ctttttactatatttaattattcaattttccccttaattgatattaacatttctta |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |
|
|
| T |
37633653 |
attatattgtatgttatctattggttgatttatatataatcaaccctcttactatatttaattattcaattatccccttaattaatattaacatttgtta |
37633554 |
T |
|
| Q |
611 |
aattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgacatttcgataatttgaaaattaatacaaaa |
692 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||||| || ||| ||| ||| ||||||||||||| || |||||| |
|
|
| T |
37633553 |
aattcttcttcccaatatttttcatactatttctctttatgtgcttgtttcacacttccataatttgaaaatgaagacaaaa |
37633472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 646 - 715
Target Start/End: Complemental strand, 37636392 - 37636323
Alignment:
| Q |
646 |
attatgtgtttctttgacatttcgataatttgaaaattaatacaaaaacgagtgaatcaaataatatgtt |
715 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37636392 |
attatgtgcttctttgacatttcgataatttgaaaattaatacaaaaatgagtgaatcaaataatatgtt |
37636323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 646 - 715
Target Start/End: Complemental strand, 37639306 - 37639237
Alignment:
| Q |
646 |
attatgtgtttctttgacatttcgataatttgaaaattaatacaaaaacgagtgaatcaaataatatgtt |
715 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37639306 |
attatgtgcttctttgacatttcgataatttgaaaattaatacaaaaatgagtgaatcaaataatatgtt |
37639237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 646 - 715
Target Start/End: Complemental strand, 37644680 - 37644611
Alignment:
| Q |
646 |
attatgtgtttctttgacatttcgataatttgaaaattaatacaaaaacgagtgaatcaaataatatgtt |
715 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37644680 |
attatgtgcttctttgacatttcgataatttgaaaattaatacaaaaatgagtgaatcaaataatatgtt |
37644611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 646 - 715
Target Start/End: Complemental strand, 37647593 - 37647524
Alignment:
| Q |
646 |
attatgtgtttctttgacatttcgataatttgaaaattaatacaaaaacgagtgaatcaaataatatgtt |
715 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37647593 |
attatgtgcttctttgacatttcgataatttgaaaattaatacaaaaatgagtgaatcaaataatatgtt |
37647524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 646 - 715
Target Start/End: Complemental strand, 37650505 - 37650436
Alignment:
| Q |
646 |
attatgtgtttctttgacatttcgataatttgaaaattaatacaaaaacgagtgaatcaaataatatgtt |
715 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37650505 |
attatgtgcttctttgacatttcgataatttgaaaattaatacaaaaatgagtgaatcaaataatatgtt |
37650436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Complemental strand, 32972932 - 32972871
Alignment:
| Q |
603 |
atttcttaaattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgaca |
664 |
Q |
| |
|
|||| ||| ||||||||||||||||||| || || ||||||| |||||||| || ||||||| |
|
|
| T |
32972932 |
atttgttatattcttcttcccaatatttttcatagtatttcttattatgtgcttgtttgaca |
32972871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Complemental strand, 42397937 - 42397876
Alignment:
| Q |
603 |
atttcttaaattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgaca |
664 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| || |||||||||| |||||||| || ||||||| |
|
|
| T |
42397937 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgaca |
42397876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 43 - 284
Target Start/End: Complemental strand, 32387471 - 32387230
Alignment:
| Q |
43 |
actttccgtaccttcattgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagc |
142 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||| |||||||||||||| |||| ||||| |
|
|
| T |
32387471 |
actttccgcaccttcgttgagatcatcttcgagaaccctacaaaggtcatccagtcttacaatttggatggttactctttcttcgccgtggctgttgagc |
32387372 |
T |
|
| Q |
143 |
caggaacatggaccccagagaagaggaagggctacaaccttttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcat |
242 |
Q |
| |
|
|||| | |||||| ||||||||||| ||| |||||||||||||||||| | ||||| |||||| | || |||||||| || |||||||| ||||| || |
|
|
| T |
32387371 |
caggcaaatggacaccagagaagagaaagaactacaaccttttggatgcagtgagcaggcacacagtgcaagtgttccccaagtcatgggccgcaattat |
32387272 |
T |
|
| Q |
243 |
gttgacattcgacaatgctggtatgtggcaattgaggtcaga |
284 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||| ||||| |
|
|
| T |
32387271 |
gttgacattcgacaacgctggtatgtggaacttgagatcaga |
32387230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 196 - 315
Target Start/End: Complemental strand, 32380956 - 32380837
Alignment:
| Q |
196 |
agcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaattgaggtcagagcatgcagagc |
295 |
Q |
| |
|
||||||||||| ||||| || || || ||||||||||||||||| |||||| |||||||||| | ||| ||||| | |||||||||||| ||| ||| |
|
|
| T |
32380956 |
agcagacacaccattcaagtatttccaaaatcatgggctgcaataatgttgtcattcgacaacgttggagtgtggaatttgaggtcagagattgctgaga |
32380857 |
T |
|
| Q |
296 |
accgttacttgggacaacaa |
315 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
32380856 |
atcgttacttgggacaacaa |
32380837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 429
Target Start/End: Complemental strand, 32387162 - 32387085
Alignment:
| Q |
352 |
agggatgaatacaaccttcctgagactcaacttgtttgcggtattgtcaaggatatgccaaggcctccaccacaatac |
429 |
Q |
| |
|
|||||||| ||||| ||||| || ||||| | || ||||| |||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
32387162 |
agggatgagtacaatcttccagatactcatcaagtctgcggcattgtcaaggatatgccaaggcctgcactacaatac |
32387085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 673
Target Start/End: Complemental strand, 43384370 - 43384300
Alignment:
| Q |
603 |
atttcttaaattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgacatttcgataa |
673 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||| ||| |||| |
|
|
| T |
43384370 |
atttattatattcttcttcccaatgtttttcgtactatttcttattatgtgtttgtttgacacttcaataa |
43384300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Complemental strand, 29999302 - 29999241
Alignment:
| Q |
603 |
atttcttaaattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgaca |
664 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| || |||||||||| |||||||| || ||||||| |
|
|
| T |
29999302 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgaca |
29999241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Original strand, 40949031 - 40949092
Alignment:
| Q |
603 |
atttcttaaattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgaca |
664 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| || |||||||||| |||||||| || ||||||| |
|
|
| T |
40949031 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgaca |
40949092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Original strand, 109247 - 109308
Alignment:
| Q |
603 |
atttcttaaattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgaca |
664 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| || |||||||||| |||||||| || ||||||| |
|
|
| T |
109247 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtggttgtttgaca |
109308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Complemental strand, 16276641 - 16276580
Alignment:
| Q |
603 |
atttcttaaattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgaca |
664 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| || |||||||||| |||||||| || ||||||| |
|
|
| T |
16276641 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgaca |
16276580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Complemental strand, 22827806 - 22827745
Alignment:
| Q |
603 |
atttcttaaattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgaca |
664 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| || |||||||||| |||||||| || ||||||| |
|
|
| T |
22827806 |
atttgttagattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgaca |
22827745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Original strand, 28318141 - 28318202
Alignment:
| Q |
603 |
atttcttaaattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgaca |
664 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| || |||||||||| |||||||| || ||||||| |
|
|
| T |
28318141 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtggttgtttgaca |
28318202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Original strand, 19043222 - 19043283
Alignment:
| Q |
603 |
atttcttaaattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgaca |
664 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| || |||||||||| |||||||| || ||||||| |
|
|
| T |
19043222 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgaca |
19043283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Complemental strand, 39836657 - 39836596
Alignment:
| Q |
603 |
atttcttaaattcttcttcccaatatttatcgtactatttctcattatgtgtttctttgaca |
664 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| || |||||||||| |||||||| || ||||||| |
|
|
| T |
39836657 |
atttgttatattcttcttcccaatgtttttcatactatttcttattatgtgcttgtttgaca |
39836596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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