View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1795_low_2 (Length: 403)
Name: NF1795_low_2
Description: NF1795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1795_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 6888449 - 6888042
Alignment:
| Q |
1 |
ttcttatctttatattttatgtctaaaaagaaatatcattaactattgtgttataaccacaatttcaatgaagagcttttctatttccattgtcaatgag |
100 |
Q |
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||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6888449 |
ttcttatctttatgttttttgtctacaaagaaatatcattaactattgtgttataaccacaatttcaatgaagagcttttctatttccattgtcaatgag |
6888350 |
T |
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| Q |
101 |
aaaagaaaatgaaagatagtcttctaattttggaacaaaactaatcccttgtactgtagttcattattctgcatgtggacaacagtacttgttcaaattg |
200 |
Q |
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| T |
6888349 |
aaaagaaaatgaaagatagtcttctaattttggaacaaaactaatcccttgtactgtagttcattattctgcatgtggacaacagtacttgttcaaattg |
6888250 |
T |
|
| Q |
201 |
acatcatcttctgatatacacatcaaagtaacgtggaaattaatcactgtttcagaatttcaaatagtgaaagagagagaatgtaccgtgagtaaaaaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6888249 |
acatcatcttctgatatacacatcaaagtaacgtggaaattaatcactgtttcagaatttcaaatagtgaaagagagagaaagtaccgtgagtaaaaaat |
6888150 |
T |
|
| Q |
301 |
tgttttaatttac-----actatcattctgcatggtccgtctttcacgcagtcagtacatcgatgatcgttcgatcaaaattaaacggtttaaataaggt |
395 |
Q |
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|||||||| |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
6888149 |
tgttttaaattacggattactatcattctgcatgatccgtctttcacgcagtcaatacatcgatgatcgttcgatcataattaaacagtttaaataaggt |
6888050 |
T |
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| Q |
396 |
tgatttta |
403 |
Q |
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| T |
6888049 |
tgatttta |
6888042 |
T |
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