View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1795_low_4 (Length: 358)

Name: NF1795_low_4
Description: NF1795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1795_low_4
NF1795_low_4
[»] chr1 (4 HSPs)
chr1 (1-343)||(8455170-8455511)
chr1 (57-214)||(43403650-43403807)
chr1 (1-246)||(48769989-48770232)
chr1 (145-246)||(9094802-9094907)
[»] scaffold0060 (1 HSPs)
scaffold0060 (10-257)||(19004-19255)
[»] chr2 (1 HSPs)
chr2 (1-254)||(40275237-40275493)
[»] chr5 (1 HSPs)
chr5 (1-251)||(18979961-18980214)
[»] chr8 (3 HSPs)
chr8 (34-253)||(26155403-26155626)
chr8 (96-251)||(19168395-19168555)
chr8 (5-94)||(19168283-19168372)
[»] chr4 (3 HSPs)
chr4 (1-256)||(1558090-1558350)
chr4 (4-160)||(3958749-3958910)
chr4 (182-252)||(3958675-3958750)
[»] chr7 (1 HSPs)
chr7 (257-343)||(36396997-36397083)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 8455511 - 8455170
Alignment:
Q  1 gtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttcaggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8455511 gtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttgtttagcagttcaggtt 8455412  T
Q  101 tcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8455411 tcttttgattacaagcaacgcttaagctagatgctagtagtatctttgcattttaggagtagttttggctcgttttctcttgtgttttctctctttgtat 8455312  T
Q  201 agggttcaggccctaccttttattgttttcttaagcctttataaaataaaataaaaaggacctaagttcatgtatattttttccctgtggaagaaaggca 300  Q
    ||||||||||| || ||||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8455311 agggttcaggctctgccttttattgttttcttgagcctttatcaaa-aaaaaaaaaaggacctaagttcatgtatattttttccctgtggaagaaaggca 8455213  T
Q  301 cgatgatacagcattagttaatttgttttgctttgttatacat 343  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8455212 cgatgatacagcattagttaatttgttttgctttgttatacat 8455170  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 57 - 214
Target Start/End: Complemental strand, 43403807 - 43403650
Alignment:
Q  57 tgttgatgaacttggctgcttttccttatttagcagttcaggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttag 156  Q
    ||||| ||||| ||||||||||||||| | ||||| || |||||||||||||||  ||||| ||||||| |||||||||||  || | ||||||| ||||    
T  43403807 tgttggtgaacatggctgcttttccttgtatagcaatttaggtttcttttgattttaagcacagcttaaactagatgctagatgtttatttgcatcttag 43403708  T
Q  157 gagtagttttggcttgttttctcttgtgttttctctctttgtatagggttcaggccct 214  Q
    |||||||||||| ||| ||||||||||   ||||||||||||||||||||||||||||    
T  43403707 gagtagttttggtttgctttctcttgtacgttctctctttgtatagggttcaggccct 43403650  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 48769989 - 48770232
Alignment:
Q  1 gtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttcaggtt 100  Q
    ||||||||  |||| |||||| |||||||| |||||||||| | ||||| | ||| ||||| ||| | ||||||| ||||||| |||||||| | |||||    
T  48769989 gtgggatatttttgattgtttagatatttgatctttctcttttgtagtgttagatttgttggtgatcatggctgcatttccttgtttagcagcttaggtt 48770088  T
Q  101 tcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtat 200  Q
    ||||||||||| |||||||||||||  |||||||||| ||| | ||||||| |||||||||||||||||||  ||||     | | ||||||||||||||    
T  48770089 tcttttgattaaaagcaaagcttaa-ttagatgctagaagtttctttgcatcttaggagtagttttggcttactttc-----tatgttctctctttgtat 48770182  T
Q  201 agggttcaggc-----cctaccttttattgttttcttaagcctttataaaa 246  Q
    |||||| ||||     ||| ||| ||||||||||||| |||||||||||||    
T  48770183 agggtttaggccctgtcctgcctcttattgttttctt-agcctttataaaa 48770232  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 9094802 - 9094907
Alignment:
Q  145 tttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtatagggttcaggc----cctaccttttattgttttcttaagccttt 240  Q
    ||||||| ||||||  |||||||||||||||| |||||||| |||||| ||||||||| ||| |  |    ||||||||||||||||||||||||| |||    
T  9094802 tttgcatcttaggaaaagttttggcttgttttttcttgtgtgttctctgtttgtatagagtttaaacctctcctaccttttattgttttcttaagctttt 9094901  T
Q  241 ataaaa 246  Q
    ||||||    
T  9094902 ataaaa 9094907  T

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Target: scaffold0060 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 19004 - 19255
Alignment:
Q  10 atttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttcaggtttcttttgat 109  Q
    ||||| |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  19004 atttgattgttttgatatttggtctttctcttttatagtgctagatatgttgatgaacttggctgcttttcattgtttagcagttcaggtttcttttgat 19103  T
Q  110 tacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtatagggttcag 209  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19104 tacaagcaaagcttaagctagatgctagtagtatctttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtatagggtccag 19203  T
Q  210 gcccta-----ccttttattgttttcttaagcctttataaaataaaataaaaa 257  Q
    |||||      ||||||||||||||||| ||||||||| ||| ||||||||||    
T  19204 gccctctcctgccttttattgttttcttgagcctttatcaaa-aaaataaaaa 19255  T

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Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 40275237 - 40275493
Alignment:
Q  1 gtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttcaggtt 100  Q
    ||||||||  |||| |||||||||| ||||||||||||||  | ||||| | | ||||||| ||||| ||||||||||||||| |||||||| | |||||    
T  40275237 gtgggatatttttgattgttttgatttttggtctttctctgctgtagtgctagttatgttggtgaacatggctgcttttccttgtttagcagcttaggtt 40275336  T
Q  101 tcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtat 200  Q
    ||||||||||  ||||||||||||| ||||||||||| ||| | ||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||    
T  40275337 tcttttgattttaagcaaagcttaaactagatgctagaagtttctttgcatcttaggagtagttttggcttgctttctcttgtatgttctctctttgtat 40275436  T
Q  201 agggttcaggccc-----taccttttattgttttcttaagcctttataaaataaaataa 254  Q
    |||||||||||||     | |||||||||||||  || ||||||||||||| |||||||    
T  40275437 agggttcaggccctctcatgccttttattgttt--tttagcctttataaaaaaaaataa 40275493  T

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Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 18979961 - 18980214
Alignment:
Q  1 gtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttcaggtt 100  Q
    ||||||||  |||| |||||| ||||||||||||||||||| | ||||| | ||| ||||| ||| | ||||||| ||||||| ||||| || | |||||    
T  18979961 gtgggataattttgattgtttagatatttggtctttctcttttgtagtgttagatttgttggtgatcatggctgcatttccttgtttagtagcttaggtt 18980060  T
Q  101 tcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtat 200  Q
    ||||||||||| ||||||||||||| ||||||||||| ||| | ||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||    
T  18980061 tcttttgattaaaagcaaagcttaa-ctagatgctagaagtttctttgcatcttaggagtagttttggcttgctttctcttgtatgttctctctttgtat 18980159  T
Q  201 agggttcaggc-----cctaccttttattgttttcttaagcctttataaaataaaa 251  Q
    ||||||||| |     ||| ||| ||||||||||||| ||||||||||||| ||||    
T  18980160 agggttcagaccctctcctgcctcttattgttttctt-agcctttataaaaaaaaa 18980214  T

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Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 34 - 253
Target Start/End: Original strand, 26155403 - 26155626
Alignment:
Q  34 tttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttcaggtttcttttgattacaagcaaagcttaagctagatg 133  Q
    |||||||| | ||||| | ||| ||||| ||||||||||||| ||||||| |||||||| | |||||||||||||||| ||||||||||||| |||||||    
T  26155403 tttctcttttttagtgctagatgtgttggtgaacttggctgcatttccttgtttagcagcttaggtttcttttgattaaaagcaaagcttaatctagatg 26155502  T
Q  134 ctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtatagggttcaggcccta-----ccttttattgttt 228  Q
    |||| |||   ||||||| |||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||      |||||||||||||    
T  26155503 ctagaagttactttgcatcttaggagtagttttggcttgctttctcttgtaggttctctctttgtatagggttcaggccctctcctgccttttattgttt 26155602  T
Q  229 tcttaagcctttataaaataaaata 253  Q
    |||| ||||||||| ||| ||||||    
T  26155603 tctt-agcctttatcaaaaaaaata 26155626  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 19168395 - 19168555
Alignment:
Q  96 aggtttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctt 195  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||| || |||| |||||| |||||||||||||||| |||||||||||||||||||    
T  19168395 aggtttcttttgattacaagcaaagcttaatctagatgctagaagtatcttcgcatcttaggaatagttttggcttgtttcctcttgtgttttctctctt 19168494  T
Q  196 tgtatagggttcaggccc-----taccttttattgttttcttaagcctttataaaataaaa 251  Q
    ||||||||||||| ||||     | ||||||||||||||||| ||||||||||||| ||||    
T  19168495 tgtatagggttcatgccctctcttgccttttattgttttcttgagcctttataaaaaaaaa 19168555  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 19168283 - 19168372
Alignment:
Q  5 gatagatttg-tttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagtt 94  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||  |||||| ||||||||||    
T  19168283 gatagatttgattttttttgatatttggtctttctcttttatagtgctagatatgttggtgaacttggctgc-attccttgtttagcagtt 19168372  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 1558350 - 1558090
Alignment:
Q  1 gtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttcaggtt 100  Q
    ||||||||  |||| |||||| ||||||||||||||||||| | ||||| | ||| ||||| ||| | |||| || ||||||| ||||| || | |||||    
T  1558350 gtgggataattttgattgtttagatatttggtctttctcttttgtagtgttagatttgttggtgatcatggcagcatttccttgtttagaagcttaggtt 1558251  T
Q  101 tcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagtagttttggcttgttttctcttgtgttttctctctttgtat 200  Q
    ||||||||||| ||||||||||||| ||||||||||| ||| | ||||||| ||||||||| |||||||||| |||||||||| | |||| |||||||||    
T  1558250 tcttttgattaaaagcaaagcttaa-ctagatgctagaagtttctttgcatcttaggagtaattttggcttgctttctcttgtatgttctttctttgtat 1558152  T
Q  201 agggttcaggc-----cctaccttttattgttttcttaagcctttat--aaaataaaataaaa 256  Q
    | |||||||||     ||| ||| ||||||||||||||| |||||||  ||||||||||||||    
T  1558151 aaggttcaggccctctcctgcctcttattgttttcttaa-cctttataaaaaataaaataaaa 1558090  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 3958910 - 3958749
Alignment:
Q  4 ggatagatttgtttgttttg-----atatttggtctttctcttatatagtgatcgatatgttgatgaacttggctgcttttccttatttagcagttcagg 98  Q
    ||||||||||| ||||||||     |||||||||||||||||| ||||||| |  |||||||| ||||||||||||| ||||||| |||||||||| |||    
T  3958910 ggatagatttgattgttttgtttcaatatttggtctttctcttttatagtgctaaatatgttggtgaacttggctgcatttccttgtttagcagtttagg 3958811  T
Q  99 tttcttttgattacaagcaaagcttaagctagatgctagtagtatttttgcattttaggagt 160  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| | ||||||| ||||||||    
T  3958810 tttcttttgattacaagcaaagcttaagctaaatgctagaagtttctttgcatcttaggagt 3958749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 3958750 - 3958675
Alignment:
Q  182 gtgttttctctctttgtatagggttcaggcccta-----ccttttattgttttcttaagcctttataaaataaaat 252  Q
    |||| ||||||| ||||||||||||||||||||      ||||||||||||||||| ||||||||| ||| |||||    
T  3958750 gtgtgttctctcattgtatagggttcaggccctctcctgccttttattgttttcttgagcctttatcaaaaaaaat 3958675  T

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Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 36396997 - 36397083
Alignment:
Q  257 aggacctaagttcatgtatattttttccctgtggaagaaaggcacgatgatacagcattagttaatttgttttgctttgttatacat 343  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36396997 aggacctaagttcatgtatattttttccctgtgggagaaaggcacgatgatacagcattagttaatttgttatgctttgttatacat 36397083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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