View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1795_low_5 (Length: 325)
Name: NF1795_low_5
Description: NF1795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1795_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 7682938 - 7682810
Alignment:
| Q |
31 |
aaatgccccctttgttatgcattccctcaccttttctctttttctactaaaaaagaggctctggtgggggacctttgggccttgacagacggtgtggggg |
130 |
Q |
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| T |
7682938 |
aaatgccccctttgtgatgcattccctcaccttttctctttttctactaaaaaaaaggctctggtgggggacctttgggccttgacagacggtgtggggg |
7682839 |
T |
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| Q |
131 |
gatggtcgtttgtttggaggagataacct |
159 |
Q |
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| T |
7682838 |
gatggtcgtttgtttggaggagataacct |
7682810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 7682811 - 7682749
Alignment:
| Q |
195 |
ctattcaagggtttagaggaggggtggaggaggatgtttggtagtggatttcagatgaggatg |
257 |
Q |
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| T |
7682811 |
ctattcaagggtttagaggaggggtggaggaggatgcttggtagtggatttcagatgaggatg |
7682749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 16196117 - 16196356
Alignment:
| Q |
20 |
aaatgggttggaaatgccccc--tttgttatgcattccctcaccttttctctttttctactaaaaaagaggctctggtgggggacctttgggccttgaca |
117 |
Q |
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| T |
16196117 |
aaatgggttggaaactccccccatttgtgaggcattccctctcattttctctctttctactaaataagaggctccagtggggagccttttggtcttaaca |
16196216 |
T |
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| Q |
118 |
ga--------cggtgtggggggatggtcgtttgtttggaggagataacctttcaattggggaaaggattta---aa--agttgttagatactattcaagg |
204 |
Q |
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| T |
16196217 |
gaggttggggggggggggggggattgtcgtttgtttaggggagattacctttcaaatgggaagaggacttacttaatgagtggtttgtcactcttcaagg |
16196316 |
T |
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| Q |
205 |
gtttagaggaggggtggaggaggatgtttggtagtggatt |
244 |
Q |
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| T |
16196317 |
gtttagaggaggggtggatgaggatgcttggcggtggatt |
16196356 |
T |
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