View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1795_low_6 (Length: 314)
Name: NF1795_low_6
Description: NF1795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1795_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 22 - 299
Target Start/End: Complemental strand, 1608994 - 1608717
Alignment:
| Q |
22 |
cacattttcctataattcattgaccatagcgaggaaaaagaaaagtgtctcacaaatagtaaaaccttcaaactttaccaaatttcaatttaattactct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1608994 |
cacattttcctataattcattgaccatagcgaggaaaaagaaaagtgtctcacaaatagtaaaaccttcaaactttaccaaatttcaatttaattactct |
1608895 |
T |
|
| Q |
122 |
gcaaatttcaaactttacaaaatctcataaaaactcatttctcactaaatcatgaaaaacaatttcaaagaccagatcacaacaatctttactcttcaat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1608894 |
gcaaatttcaaactttacaaaatctcataaaaactcatttctcactaaatcatgaaaaacaatttcaaagaccagatcacaacaatcttcactcttcaat |
1608795 |
T |
|
| Q |
222 |
aactttctcaaagctcataaacttcttagtcctcttaatcattatctcctaccttttatattcccttagtgatggtta |
299 |
Q |
| |
|
|||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1608794 |
aactttatcaaagctaataaacttcttattcctcttaatcattatctcctaccttttctattcccttagtgatggtta |
1608717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 11091455 - 11091533
Alignment:
| Q |
212 |
actcttcaataactttctcaaagctcataaacttcttagtcctcttaatcattatctcctaccttttatattcccttag |
290 |
Q |
| |
|
||||||| || ||||||||||||||||| | ||||| |||||||||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
11091455 |
actcttccatcactttctcaaagctcatcactttcttcttcctcttaatcacaatctcttaccttttttattctcttag |
11091533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University