View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17961_high_11 (Length: 378)

Name: NF17961_high_11
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17961_high_11
NF17961_high_11
[»] scaffold0155 (2 HSPs)
scaffold0155 (6-378)||(25787-26168)
scaffold0155 (304-378)||(34314-34388)
[»] chr6 (10 HSPs)
chr6 (304-378)||(8507729-8507803)
chr6 (304-376)||(8548774-8548846)
chr6 (304-376)||(8625485-8625557)
chr6 (304-378)||(8843079-8843153)
chr6 (317-378)||(5082790-5082851)
chr6 (304-377)||(8647488-8647561)
chr6 (304-378)||(8527311-8527385)
chr6 (304-378)||(8541104-8541178)
chr6 (304-367)||(8627453-8627516)
chr6 (304-358)||(8514459-8514513)
[»] chr8 (1 HSPs)
chr8 (304-378)||(4538690-4538764)
[»] chr4 (3 HSPs)
chr4 (317-378)||(10779845-10779906)
chr4 (317-378)||(10973454-10973515)
chr4 (317-378)||(10782150-10782211)


Alignment Details
Target: scaffold0155 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 6 - 378
Target Start/End: Original strand, 25787 - 26168
Alignment:
Q  6 tgtcgaagaatatcaacatcttttgcgagtattgggcatatatcatttttatgcagactatcaatacaatcatcaatgtgttgcataacaaaacctattt 105  Q
    |||||||||||||||||||| ||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25787 tgtcgaagaatatcaacatcctttgcaagtattgggctagtatcatttttatgcagactatcaatacaatcatcaatgtgttgcataacaaaacctattt 25886  T
Q  106 gtgaagccatgtctggataatttttgagctccaaatctattttcgcacccaaaagcctaccgcgaatgctatcatcgccatcgaaatctattgcacaatg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25887 gtgaagccatgtctggataatttttgagctccaaatctattttcgcacccaaaagcctaccgcgaatgctatcatcgccatcgaaatctattgcacaacg 25986  T
Q  206 agtataatagtttcttaccgtaacatttctttgcaaattaatgacaagtttgtatgcaatatagaaattgtccttaaccacaccaatagtgtaatttg-- 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  25987 agtataatagtttcttaccgtaacatttctttgcaaattaatgacaagtttgtatgcaatatagaaattgtccttaaccacaccaatagtgtaatttgca 26086  T
Q  304 -------caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 378  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26087 agatcaacaagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 26168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 34388 - 34314
Alignment:
Q  304 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 378  Q
    |||||||||||  |||| ||| |||||| ||||||||||| |||||| | ||||||||||||||||  |||||||    
T  34388 caagatctacaccttttactcgtcctggttttgagttgagaagatttaagcaatatgaaggattgggggcttctt 34314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 8507729 - 8507803
Alignment:
Q  304 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 378  Q
    ||||||||||| ||||||||| |||||| ||||||||||| |||||||||||| ||||||||||||| |||||||    
T  8507729 caagatctacactttttgctcatcctggttttgagttgagaagatttgaacaaaatgaaggattggaggcttctt 8507803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 8548846 - 8548774
Alignment:
Q  304 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttc 376  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||  |||||||||||||||||||| |||||    
T  8548846 caagatctacaccttttgctcctcctggctttgagttgagaagatacgaacaatatgaaggattggaagcttc 8548774  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 8625485 - 8625557
Alignment:
Q  304 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttc 376  Q
    ||||||||||   ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||    
T  8625485 caagatctacgccttttgctcctcctggctttgagttgagaagatatgaacaatatgaaggattggaagcttc 8625557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 8843153 - 8843079
Alignment:
Q  304 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 378  Q
    |||||||||||  |||||||||||||| |||||||||||| |||||||||||||| | ||||||||| |||||||    
T  8843153 caagatctacaccttttgctcctcctgactttgagttgagaagatttgaacaatacgtaggattggaggcttctt 8843079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 5082851 - 5082790
Alignment:
Q  317 ttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 378  Q
    ||||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||||    
T  5082851 ttttgctcctcctggctttgagttgagaagatttgaacaatatgattgattggaggcttctt 5082790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 8647488 - 8647561
Alignment:
Q  304 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttct 377  Q
    |||||||||||  |||||| |||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  8647488 caagatctacaccttttgcacctccttgctttgagttgagaagatttgaacaatatgtaggattggaggcttct 8647561  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 8527385 - 8527311
Alignment:
Q  304 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 378  Q
    |||||||||||  |||||| ||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||    
T  8527385 caagatctacaccttttgcacctcctggcttcgaattgagaagatttgagcaatacgaaggattggatgcttctt 8527311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 8541104 - 8541178
Alignment:
Q  304 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 378  Q
    |||||||||||  |||||| ||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||    
T  8541104 caagatctacaccttttgcacctcctggcttcgaattgagaagatttgagcaatacgaaggattggatgcttctt 8541178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 367
Target Start/End: Complemental strand, 8627516 - 8627453
Alignment:
Q  304 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggatt 367  Q
    |||||||||||  |||||| ||  |||||||||||||||| |||||||||||||||||||||||    
T  8627516 caagatctacaccttttgcaccaactggctttgagttgagaagatttgaacaatatgaaggatt 8627453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 358
Target Start/End: Complemental strand, 8514513 - 8514459
Alignment:
Q  304 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaata 358  Q
    |||||||||||  |||||| ||||||||||| |||||||| |||||||| |||||    
T  8514513 caagatctacaccttttgcacctcctggcttcgagttgagaagatttgagcaata 8514459  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 4538764 - 4538690
Alignment:
Q  304 caagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 378  Q
    |||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||||    
T  4538764 caagatctgcaccttttgctcctcctggctttgagttgagaagatttgaacaatatgattgattggaggcttctt 4538690  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 10779845 - 10779906
Alignment:
Q  317 ttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 378  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||||||| || |||||||    
T  10779845 ttttgctcctcctggctttgagttgagaagatttaagcaatatgaaggatttgaggcttctt 10779906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 10973454 - 10973515
Alignment:
Q  317 ttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 378  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||||||| || |||||||    
T  10973454 ttttgctcctcctggctttgagttgagaagatttaagcaatatgaaggatttgaggcttctt 10973515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 10782150 - 10782211
Alignment:
Q  317 ttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctt 378  Q
    |||||||| ||||| |||||||||||| |||||| | ||||||||||||||||| |||||||    
T  10782150 ttttgctcttcctgactttgagttgagaagatttaagcaatatgaaggattggaggcttctt 10782211  T

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