View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_high_12 (Length: 368)
Name: NF17961_high_12
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 352
Target Start/End: Original strand, 4313528 - 4313866
Alignment:
| Q |
14 |
agatgttgcaaattttttaattttctcatttctttggtcatctcttctaaactagttccaatgaaactaagatggcgcagattcacaagattttgcatat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4313528 |
agatgttgcaaattttttaattttctcatttctttggtcatctcttctaaactagttccaatgaaactaagatggcgcagattcacaagattttgcacat |
4313627 |
T |
|
| Q |
114 |
cattgggaagcctgcttagacgataacaataagacaacttcaacgtttgtagattatacaaattacacaatgactctggtaacgtctttatagctgtgta |
213 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4313628 |
cattgggaagcctgcttagacgataacaataacacaacttcaacgtttgtagattgtacaaattacacaatgactctggtaacgtctttatagctgtgta |
4313727 |
T |
|
| Q |
214 |
agagatatccaaataacgtaaatggataagttcacctattgaatcaggcaatgcatcaaaatgtgaaaagtgggaaaatgacaagactctcaagcacttc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4313728 |
agagatatccaaataacgtaaatggataagttcacctattgaatcgggcaatgcatcaaaatgtgaaaagtgggaaaatgacaagactctcaagcacttc |
4313827 |
T |
|
| Q |
314 |
aaatttgacaaaatgatgcatgatgccatttcattgttg |
352 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
4313828 |
aaatttgacaaaatgatgcatgatgccatttcgttgttg |
4313866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 4254950 - 4254620
Alignment:
| Q |
20 |
tgcaaattttttaattttctcatttctttggtcatctcttctaaactagttccaatgaaactaagatggcgcagattcacaagattttgcatatcattgg |
119 |
Q |
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||||||| |||||||||||||||| | | | ||||| |||||||||||||||||||| | |||||||||||| ||| |||||||||||||| ||||||| |
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| T |
4254950 |
tgcaaatgatttaattttctcatttttctaggcatctgttctaaactagttccaatgatattaagatggcgcaaatttacaagattttgcatgtcattgg |
4254851 |
T |
|
| Q |
120 |
gaagcctgcttagacgataacaataagacaacttcaacgtttgtagattatacaaattacacaatgactctggtaacgtctttatagctgtgtaagagat |
219 |
Q |
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| T |
4254850 |
gaagcttggatagttgtttacaattgcacaacttcaacgtttgca--ttatacaaattacacaatgactctggtagcgtctttatagttgtggaagagag |
4254753 |
T |
|
| Q |
220 |
atccaaataacgtaaatggataagttcacctattgaatcaggcaatgcatcaaaatgtgaaaagtgggaaaatgacaagactctcaagcacttcaaattt |
319 |
Q |
| |
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|| |||||||| |||||||| | |||| | |||||||| |||||||||||||||| || | ||| | ||||||||| |||||||||||||| ||||| |
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| T |
4254752 |
atttaaataacgcaaatggattaattcatcaattgaatctggcaatgcatcaaaatatggagagttgtgaaatgacaaaactctcaagcactttaaattc |
4254653 |
T |
|
| Q |
320 |
gacaaaatgatgcatgatgccatttcattgttg |
352 |
Q |
| |
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||||||| ||||||||||||| ||||||||||| |
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| T |
4254652 |
gacaaaacgatgcatgatgccttttcattgttg |
4254620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 4247839 - 4247523
Alignment:
| Q |
14 |
agatgttgcaaattttttaattttctcatttctttggtcatctcttctaaactagttccaatgaaactaagatggcgcagattcacaagattttgcatat |
113 |
Q |
| |
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||||||||||||| |||||| ||||||||| | | ||||||||||||| |||| | ||||| || |||||||| ||| |||||||||||||| | |
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| T |
4247839 |
agatgttgcaaatgatttaatcggctcatttctctaggcatctcttctaaataagtttccttgaaatcaaaatggcgcaaatttacaagattttgcatgt |
4247740 |
T |
|
| Q |
114 |
cattgggaagcctgcttagacgataacaataagacaacttcaacgtttgtagattatacaaattacacaatgactctggtaacgtctttatagctgtgta |
213 |
Q |
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| |||| ||| || | || | | |||||| ||| ||||| |||||||||||||||| |||||||| || |||||||| |||| || | ||| | |
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| T |
4247739 |
ccctgggtagcttggtcagctgttcacaatagcacagtttcaaagtttgtagattatacaggttacacaacgagtctggtaaagtctctacacctgagct |
4247640 |
T |
|
| Q |
214 |
agagatatccaaataacgtaaatggataagttcacctattgaatcaggcaatgcatcaaaatgtgaaaagtgggaaaatgacaagactctcaagcacttc |
313 |
Q |
| |
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||||| |||||||||||| |||||||| | ||||||||||||||| ||||||| || | | ||| |||| | ||||||||| ||||||||| | ||| |
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| T |
4247639 |
agagagatccaaataacgcaaatggatcaattcacctattgaatccggcaatgtatggagaagtgtaaagcagttaaatgacaaaactctcaagtatttc |
4247540 |
T |
|
| Q |
314 |
aaatttgacaaaatgat |
330 |
Q |
| |
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||||| |||||||||| |
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| T |
4247539 |
aaattcaacaaaatgat |
4247523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 41934399 - 41934067
Alignment:
| Q |
19 |
ttgcaaattttttaattttctcatttctttggtcatctcttctaaactagttccaatgaaactaagatggcgcagattcacaagattttgcatatcattg |
118 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||| |
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| T |
41934399 |
ttgcaaattttttaatttgctcatttctccagtcatctcttctaacctagtaccaatgaaactaagatggcgcaaatttacaagattttgcatgccattg |
41934300 |
T |
|
| Q |
119 |
ggaagcctgcttagacgataacaataagacaacttcaacgtttgtagattatacaaattacacaatgactctggtaacgtctttatagctgtgtaagaga |
218 |
Q |
| |
|
|||||||| ||||| || ||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| ||| | ||||| |
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| T |
41934299 |
ggaagcctttttagataattacaataacacaacttcaacgtttgtagattgtacagattacacaatgactttggtaacgtctttatagttgttttagaga |
41934200 |
T |
|
| Q |
219 |
tatcc---aaataacgtaaatggataagttcacctattgaatcaggcaatgcatcaaaatgtgaaaagtgggaaaatgacaagactctcaagcacttcaa |
315 |
Q |
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||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| || || |||||| ||||||||||| ||||||||||||||||| |
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| T |
41934199 |
tatccaaaaaataacataaatggatcagttcacctattgaatcaggcaatgcatcaagatatggaaagtgtgaaaatgacaaaactctcaagcacttcaa |
41934100 |
T |
|
| Q |
316 |
atttgacaaaatgatgcatgatgccatttcatt |
348 |
Q |
| |
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||||||||||||| |||||| |||| ||||||| |
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| T |
41934099 |
atttgacaaaatggtgcatggtgccttttcatt |
41934067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 151 - 333
Target Start/End: Original strand, 34801739 - 34801921
Alignment:
| Q |
151 |
cttcaacgtttgtagattatacaaattacacaatgactctggtaacgtctttatagctgtgtaagagatatccaaataacgtaaatggataagttcacct |
250 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| ||| || |||||| ||||||| |||| ||||| |||||||||||| |||||||| |||||| || |
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|
| T |
34801739 |
cttcaaagtttgtagattatacatattacacagtgaatccggtaacagctttatatatgtgccagagagatccaaataacgcaaatggatcagttcatct |
34801838 |
T |
|
| Q |
251 |
attgaatcaggcaatgcatcaaaatgtgaaaagtgggaaaatgacaagactctcaagcacttcaaatttgacaaaatgatgca |
333 |
Q |
| |
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|| |||| |||||||||| || || || | ||| | ||||||||| ||||||||| |||||||||| ||||||||||||| |
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| T |
34801839 |
atcaaatcgggcaatgcataaagatatggatagttgcgaaatgacaaaactctcaagtacttcaaattcaacaaaatgatgca |
34801921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 6059089 - 6059201
Alignment:
| Q |
152 |
ttcaacgtttgtagattatacaaattacacaatgactctggtaacgtctttatagctgtgtaagagatatccaaataacgtaaatggataagttcaccta |
251 |
Q |
| |
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||||| ||||| ||||| ||||||||||||||||||||||| || ||| |||| |||| | |||| || ||| || || |||||||| | |||||||| |
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| T |
6059089 |
ttcaaagtttgcagattgtacaaattacacaatgactctggcaaggtccttattcctgtcaatgagagattcaagtatcgcaaatggatcaattcaccta |
6059188 |
T |
|
| Q |
252 |
ttgaatcaggcaa |
264 |
Q |
| |
|
||||||||||||| |
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|
| T |
6059189 |
ttgaatcaggcaa |
6059201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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