View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_high_13 (Length: 342)
Name: NF17961_high_13
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 31113079 - 31113283
Alignment:
| Q |
6 |
cataggatgtggtataaagttataaaatttagtacctgtgtcaatgttaccgatgatggtattttcaccaaaccttcccttttgccaagctgagttgata |
105 |
Q |
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| T |
31113079 |
cataggatgtggtataaagttataaaatttagtacctgtgtcaatgttaccgatgatggtattttcaccaaaccttcccttttgccaagctgagttgata |
31113178 |
T |
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| Q |
106 |
tcatttccacgcaatccaagaaattcccaagaacgtgtagtgtgcagtttatgctctttgctcaaaaacacagataccacctttggattttctgcatata |
205 |
Q |
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| T |
31113179 |
tcatttccacgcaatccaagaaattcccaagaacgtgtagtgtgcagtttatgctctttgctcaaaaacacagataccacctttggattttctgcatata |
31113278 |
T |
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| Q |
206 |
ggttg |
210 |
Q |
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||||| |
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| T |
31113279 |
ggttg |
31113283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 31065878 - 31066063
Alignment:
| Q |
20 |
taaagttataaaatttagtacctgtgtcaatgttaccgatgatggtattttcaccaaaccttcccttttgccaagctgagttgatatcatttccacgcaa |
119 |
Q |
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| T |
31065878 |
taaaattataaaatttagtacctgtatcaatgttagctatgatggtattttcaccaaaccttcccttttgccaagctgagttgatatcatttccatgcaa |
31065977 |
T |
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| Q |
120 |
tccaagaaattcccaagaacgtgtagtgtgcagtttatgctctttgctcaaaaacacagataccacctttggattttctgcatata |
205 |
Q |
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| T |
31065978 |
tccaagaaattcccaagaacgtgtagtgtgcagtttatgctctttgctcaagaacacagacaccacctttgggttttctgcatata |
31066063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 31054338 - 31054493
Alignment:
| Q |
49 |
atgttaccgatgatggtattttcaccaaaccttcccttttgccaagctgagttgatatcatttccacgcaatccaagaaattcccaagaacgtgtagtgt |
148 |
Q |
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| T |
31054338 |
atgttagctatgatggtattttcaccaaatcttcccttttgccaagctgagttgatatcatttccacgcaatccaagaaattcccatgaacgtgtagtgt |
31054437 |
T |
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| Q |
149 |
gcagtttatgctctttgctcaaaaacacagataccacctttggattttctgcatat |
204 |
Q |
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| T |
31054438 |
gtaatttatgctctttgctcaagaacacagacaccacctttggattttctgcatat |
31054493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 31149287 - 31149454
Alignment:
| Q |
37 |
gtacctgtgtcaatgttaccgatgatggtattttcaccaaaccttcccttttgccaagctgagttgatatcatttccacgcaatccaagaaattcccaag |
136 |
Q |
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| T |
31149287 |
gtacctgtatcaatgttagctataatggtattttcaccaaaccttcccttttgccaagctgtgttgacatcatttgtacttagtccaaggaattcccaag |
31149386 |
T |
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| Q |
137 |
aacgtgtagtgtgcagtttatgctctttgctcaaaaacacagataccacctttggattttctgcatat |
204 |
Q |
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| T |
31149387 |
aacgtgttgtgtgcagtttatgagatttgcttaagaacacagataccacctttggattttctgcatat |
31149454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 31167579 - 31167746
Alignment:
| Q |
37 |
gtacctgtgtcaatgttaccgatgatggtattttcaccaaaccttcccttttgccaagctgagttgatatcatttccacgcaatccaagaaattcccaag |
136 |
Q |
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| T |
31167579 |
gtacctgtatcaatgttagctataatggtattttcaccaaaccttcccttttgccaagctgtgttgacatcatttgtacttagtccaaggaattcccaag |
31167678 |
T |
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| Q |
137 |
aacgtgtagtgtgcagtttatgctctttgctcaaaaacacagataccacctttggattttctgcatat |
204 |
Q |
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| T |
31167679 |
aacgtgttgtgtgcagtttatgagatttgcttaagaacacagataccacctttggattttctgcatat |
31167746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 31113345 - 31113402
Alignment:
| Q |
271 |
gcttatgacagtggaaacatgctaattgtgttacttacttgcaatttgtgcagcttct |
328 |
Q |
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| T |
31113345 |
gcttatgacagtggaaacatgctaattgtgttacttacttgcaatttgtgcagcttct |
31113402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 200
Target Start/End: Complemental strand, 31198125 - 31197963
Alignment:
| Q |
38 |
tacctgtgtcaatgttaccgatgatggtattttcaccaaaccttcccttttgccaagctgagttgatatcatttccacgcaatccaagaaattcccaaga |
137 |
Q |
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|||||||||||||||| | || || |||||||||||||| ||||||||||||| || | ||| || |||||| |||| ||||||||||||||| || |
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| T |
31198125 |
tacctgtgtcaatgtttgcaattattgtattttcaccaaattttcccttttgccatgcagtgttcttagcatttctgcgcagtccaagaaattcccatga |
31198026 |
T |
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| Q |
138 |
acgtgtagtgtgcagtttatgctctttgctcaaaaacacagataccacctttggattttctgc |
200 |
Q |
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| T |
31198025 |
ccgggtagtgtgcagtttatgaggtttgctcaagaacacagacactacatttcgcttttctgc |
31197963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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