View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_high_17 (Length: 327)
Name: NF17961_high_17
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 8883974 - 8884288
Alignment:
| Q |
1 |
ttgttagcagcatggttcagctcttgttgattcctgatagaaccatttggaccccctgttcttgtttttgcatcgtatgtaccagcatcatgccacctat |
100 |
Q |
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| T |
8883974 |
ttgttagcagcatggttcagctcttgttgattcctgatagaaccatttggaccccctgttcttgtttttgcgtcgtatgtaccagcatcatgccacctat |
8884073 |
T |
|
| Q |
101 |
aaatcaatactatatgttatacaatttatgtatatgtt--atagtaaaaggtttgtaaagttgaaattaatgtaacaaacgtacgctaatcgtagcatga |
198 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8884074 |
aaatcaatattatatgttatacaatttatgtatatgttttatagtaaaaggtttgtaaagttgaaattattgtaacaaacgtacgctaatcgtagcatga |
8884173 |
T |
|
| Q |
199 |
gaggagcacattttttattagtgataaaagaacgaagatcgcgacaagcctcctcgatttctttaacatactctgcatcaactgcatatttagccatact |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8884174 |
gaggagcacattttttattagtgataaaagaacgaagatcgcgacgaacctcctcgatttctttaacatactctgcatcaactgcatatttagccatac- |
8884272 |
T |
|
| Q |
299 |
tttcaaggctttggtt |
314 |
Q |
| |
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|| ||||||||||||| |
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| T |
8884273 |
ttgcaaggctttggtt |
8884288 |
T |
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