View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_high_2 (Length: 662)
Name: NF17961_high_2
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_high_2 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 71448 - 71596
Alignment:
| Q |
17 |
gaagtgtagtcgggagagctgtcataaactttaagcaattattggtaacgaatgttgttgcatttgggacggattggttcaacttatttagaggtttcta |
116 |
Q |
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| T |
71448 |
gaagtgtagtcgggagagctgtcataaactttaagcaattattggtaacgaatgttgttgcatttgggacggattggttcaacttatttagaggtttcta |
71547 |
T |
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| Q |
117 |
gaactggattggtacaaactttcgatttagaaaaagcaaagattgacaac |
166 |
Q |
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| T |
71548 |
gaactggattggtac-aactttcgatttagaaaaagcaaagattgacaac |
71596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 69968 - 70004
Alignment:
| Q |
251 |
aaactaagttaaaaacaatacaattatcgattaaaaaa |
288 |
Q |
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| T |
69968 |
aaactaagttaaaaacaatacaattatc-attaaaaaa |
70004 |
T |
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Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 526 - 653
Target Start/End: Original strand, 25456521 - 25456652
Alignment:
| Q |
526 |
attttgcccttcctgatggctttaaggggcattttagtaaatatgtaattgatgagttttctttcttgacaggtcatcgttttttcct----tatatata |
621 |
Q |
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| T |
25456521 |
attttgcccttcctgatggctttaaggggccttttagtaaatatgtaattgatgagttttctttcttgacaagtcatcgttttttccttatatatatata |
25456620 |
T |
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| Q |
622 |
ggcaggttatacgactttgtttgatattcttc |
653 |
Q |
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| T |
25456621 |
ggcaggttatacgactttgtttcattttcttc |
25456652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 526 - 611
Target Start/End: Complemental strand, 1966228 - 1966143
Alignment:
| Q |
526 |
attttgcccttcctgatggctttaaggggcattttagtaaatatgtaattgatgagttttctttcttgacaggtcatcgttttttc |
611 |
Q |
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| T |
1966228 |
attttgcccttcctggtggctttaaggggcattttagtaaatatgtaattgatgagttttctttcttgacaggtcatcgttttttc |
1966143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 460
Target Start/End: Complemental strand, 21169204 - 21169166
Alignment:
| Q |
422 |
gagtctatccatgaatgcttttgtattgtagtgaaatca |
460 |
Q |
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| T |
21169204 |
gagtctatccatgaatgcttttgtattgtggtgaaatca |
21169166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 464
Target Start/End: Complemental strand, 21286689 - 21286651
Alignment:
| Q |
426 |
ctatccatgaatgcttttgtattgtagtgaaatcaattg |
464 |
Q |
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| T |
21286689 |
ctatctatgaatgattttgtattgtagtgaaatcaattg |
21286651 |
T |
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