View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_high_29 (Length: 237)
Name: NF17961_high_29
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22126755 - 22126534
Alignment:
| Q |
1 |
tttggaaattttgatacgccctgtaatgattaatcatatttcatcatgagaaacgttcaacnnnnnnnctgcttgatgtcactgtagactaaaaaccatg |
100 |
Q |
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| T |
22126755 |
tttggaaattttgatacgccgtgtaatgattagtcatatttcatcatgagaaacgttcaacaaaaaa-ctgcttgatgtcactgtagactaaaaactatg |
22126657 |
T |
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| Q |
101 |
caagtattatctttgtccaatcagtgctgtaccttattttgctaaacataaataattggcattcatacagctgaacatgaaaatatggctgatgcatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22126656 |
caagtattatctttgtccaatcagtgctgtaccttattttgctaaacataaataattggcattcatacagctgaacatgaaaatatggctgatgcatatt |
22126557 |
T |
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| Q |
201 |
ctttgagaagagtgtgttagagt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
22126556 |
ctttgagaagagtgtgttagagt |
22126534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 26778147 - 26778018
Alignment:
| Q |
74 |
tgatgtcactgtagactaaaaaccatgcaagtattatctttgtccaatcagtgctgtaccttattttgctaaacataaataattggcattcatacagctg |
173 |
Q |
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||||||||| ||||||||||| | ||||||||||||||||||| || | ||||| || |||| |||||||||| |||| ||||||||||||||| || | |
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| T |
26778147 |
tgatgtcaccgtagactaaaagctatgcaagtattatctttgttcattgagtgccgtgcctt-ttttgctaaa-ataa-taattggcattcatatagtgg |
26778051 |
T |
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| Q |
174 |
aacatgaaaatatggctgatgcatattctttga |
206 |
Q |
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||||||| || |||||||||||||| ||||||| |
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| T |
26778050 |
aacatgacaagatggctgatgcatactctttga |
26778018 |
T |
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