View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17961_high_36 (Length: 206)
Name: NF17961_high_36
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_high_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 38232178 - 38232015
Alignment:
| Q |
19 |
gaactctgttgtattgattatggtgaaatagtaaaacttcaaataggaagtgacgatgaaaa--cattagaaaacaatgaatgatgaggcactgaagaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38232178 |
gaactctgttgtattgattatggtggaatagtaaaacttcaaataggaagtgacgatgaaaagacattagaaaacaatgaatgatgaggcactgaagaaa |
38232079 |
T |
|
| Q |
117 |
cccgctaaaggaatctcttattgtttttggtcttctagtggatatagtaggttcctttttagca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38232078 |
cccgctaaaggaatctcttattgtttttggtcttctagtggatatagtaggttcctttttagca |
38232015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 38225860 - 38225701
Alignment:
| Q |
31 |
attgattatggtgaaatagtaaaacttcaaataggaagtgacgatgaaaa--cattagaaaacaatgaatgatgaggcactgaagaaacccgctaaagga |
128 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||| |||| ||||||| || |||| ||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
38225860 |
attgattctagtggaatagtaaaacttcaaataggaaatgacaatgaaaaggcaatagagaacaatgaatgatgaggtactgaagaaacccgttaaagga |
38225761 |
T |
|
| Q |
129 |
atctcttattgtttttggtcttctagtggatatagtaggttcctttttagcattacacta |
188 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
38225760 |
atcctctattgtttttggtcttctagtggatatagcaaattcctttttagtgttacacta |
38225701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 35706485 - 35706307
Alignment:
| Q |
14 |
caaaggaactctgttgtattgattatggtgaaatagtaaaacttcaaataggaagtgacgatgaaaa---cattagaaaacaatgaatgatgaggcactg |
110 |
Q |
| |
|
||||||||| || || |||||||| || | |||||||||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||| | || |
|
|
| T |
35706485 |
caaaggaaccctattatattgattctgattgaatagtaaaacttcaaataggaagtgacaatgaataagacatttgaaaacaaggaatgatgaggtaatg |
35706386 |
T |
|
| Q |
111 |
aagaaacccgctaaaggaatctcttattgtttttggtcttctagtggatatagtaggttcctttttagcattacactac |
189 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||| |
|
|
| T |
35706385 |
aagaaaccggctaaaggaatcccttattgtttttggtcttctagtggatatagcaggtttctttttggtgttacactac |
35706307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 9828700 - 9828551
Alignment:
| Q |
39 |
tggtgaaatagtaaaacttcaaataggaagtgacgatgaaaa--cattagaaaacaatgaatgatgaggcactgaagaaacccgctaaaggaatctctta |
136 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||| ||||||| || |||||||||| ||| ||| ||| | ||||||||| | || ||||||| |||| |
|
|
| T |
9828700 |
tggtggaattgtaaaactttaaataggaagtgacaatgaaaaggcaatagaaaacaaggaacgataaggtagtgaagaaactggttagaggaatccctta |
9828601 |
T |
|
| Q |
137 |
ttgt-ttttggtcttctagtggatatagtaggttcctttttagcattaca |
185 |
Q |
| |
|
|| | |||| | |||||||| || |||| ||||||||||||||| ||||| |
|
|
| T |
9828600 |
ttttattttaggcttctagtagaaataggaggttcctttttagcgttaca |
9828551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 10457450 - 10457514
Alignment:
| Q |
123 |
aaaggaatctcttattgtttttggtcttctagtggatatagtaggttcctttttagcattacact |
187 |
Q |
| |
|
|||| |||| ||||||||||||||||||| ||| |||||||||| |||| |||||| |||||||| |
|
|
| T |
10457450 |
aaagaaatcccttattgtttttggtcttcaagttgatatagtagattcccttttagtattacact |
10457514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University