View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17961_high_7 (Length: 442)
Name: NF17961_high_7
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 34633298 - 34633723
Alignment:
| Q |
1 |
aggtttgaacaaccacataaataaaattgtacaatacatttcaactcaaaatcttaaaacattaagcatatggatcttctcacttatatgttgatcaaca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34633298 |
aggtttgaacaaccacacaaataaaattgtacaataaatctcaactcaaaatcttaaaacattaagcatatggatcttctcacttatatgttgatcaaca |
34633397 |
T |
|
| Q |
101 |
tcaacttttccattcaattttggaccctattcacatgtgaaataccaataatatcttccttaaatatgaatccatcgattcttatgggtattttgccctt |
200 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34633398 |
tcaacttttccatccaattttggaccc---------gtgaaataccaataatatcttccttaaatatgaatccatcgattcttatgggtatttcgccctt |
34633488 |
T |
|
| Q |
201 |
aaactggaatcttatttttatcacatacacttacacgtccatcaacatgacacctcacctgatcatctttcttagaaagactttcgatacaaggatcatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
34633489 |
aaactggaatcttatttttatcacatacacttacacgtccatcaacatgacacctcacctgatcatcgttcttagaaagacttttgatacaaggatcatt |
34633588 |
T |
|
| Q |
301 |
--------ccatcggctctaatactaatgttgggtattcatgagggagccagaggatcaacatatttgaatttgagaaaacatacaagtgaaatttgaca |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34633589 |
ccatcgaaccatcggctctaatactaatgttgggtattcatgagggagccagaggatcaacatattcgaatttgagaaaacatacaagtgaaatttgaca |
34633688 |
T |
|
| Q |
393 |
ccacatcttgactcaaaacctaagacgttgattat |
427 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| |
|
|
| T |
34633689 |
ccacatcttgactcaaaacctaagacattggttat |
34633723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 4791611 - 4791651
Alignment:
| Q |
61 |
attaagcatatggatcttctcacttatatgttgatcaacat |
101 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||| |
|
|
| T |
4791611 |
attaagcatatggatcatatcacttatatgttgctcaacat |
4791651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University