View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_1 (Length: 704)
Name: NF17961_low_1
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 291 - 674
Target Start/End: Original strand, 39728591 - 39728975
Alignment:
| Q |
291 |
aatataaacataaacaataaagtgtattgatgcatgtgttcgatttgtgtatgaccacgtagatagggaaaacttagtgatgaagaattgaaccttattt |
390 |
Q |
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| T |
39728591 |
aatataaacataaacaataaagtgtattggtgcatgtgttcgatttgtgtatgaccacgtagatagggaaaacttagtgatgaagaattgaaccttattt |
39728690 |
T |
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| Q |
391 |
ttatcattccttaataaaccttcacaattcacattcgtactttgcatgatgcaatgtacactattgagtatttgactcttttggatcaagatgccacaaa |
490 |
Q |
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| T |
39728691 |
ttatcattccttaataaaccttcacaattcacattcgtactttgcataatgcaatgtacactattgagtatttgactcttttggatcaagatgccacaaa |
39728790 |
T |
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| Q |
491 |
taatcgtacttgttaagattctcannnnnnnnnncttctgaatatgaagcatgacatgtgttgcatatgaagcactcatgctcattttggccatggggat |
590 |
Q |
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| T |
39728791 |
taatcgtacttgctaagattctcattttttttttcttctgaatatgaagcatgacatgtgttgcatatgaagcactcatgctcattttggccatggggat |
39728890 |
T |
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| Q |
591 |
tgcaattgccacatgttgagtagtagacagaagtcaccaaaacaatcgaatttagaatttgaagttat-gggtagcactttggtg |
674 |
Q |
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| T |
39728891 |
tgcaattgccacatgttgagtagtagacataagtcaccaaaacaatcgaatttagaatttgaagttatggggtagcactttggtg |
39728975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 39728287 - 39728577
Alignment:
| Q |
17 |
attagaatgaagattttgaaaacaatacaatacaaaatgcttgtatattttgcacgcacttaacattccaaaaatctttgttaaattcctcggtctagat |
116 |
Q |
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| T |
39728287 |
attagaatgaagattttgaaaacaatacaatacaaaatgcttgtatattttgcacgcacttaacattccaaaaatctttgttaaattcctcgatctagat |
39728386 |
T |
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| Q |
117 |
aaaatatttacgaaatggacaaacatacgcatgcatatataattggctcacgatatttgaactggtgcatcaaaccaacccaataagaaaataatgatgg |
216 |
Q |
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| T |
39728387 |
aaaatatttacgaaatggaccaacatacgcatgcatatataattggctcacgatatttgaactggtgcatcaaaccaacccaataagaaaataatgatgg |
39728486 |
T |
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| Q |
217 |
gaacaacaacttggaccgatgcagctatacactatctattttcctaagatcatattgcatatttttaattcaacaatataaacataaacaa |
307 |
Q |
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| T |
39728487 |
gaacaacaacttggaccgatgcagctatacactatctattttcctaagatcatattgcatatttttaattcaaaaatataaacataaacaa |
39728577 |
T |
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