View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_14 (Length: 336)
Name: NF17961_low_14
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 32101297 - 32101600
Alignment:
| Q |
17 |
agaccagccaagcttgtgatattggtgaatttaatccatgagtgttaatactcccggtcctcattttcgtgtcattcatcttttttggtcaatattttgt |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32101297 |
agaccagtcaagcttgtgatattggtgaatttaatccacgagtgttgatactcctagtcctcattttcgtgtcattcatcttttttggtcaatattttgt |
32101396 |
T |
|
| Q |
117 |
ttttgtagctcctgtaatacttcttatagtattaatcttcttctatgttgtaattaattaggttaatatgtgttctagtgctggcttttgtttttatgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||||| ||| |
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| T |
32101397 |
ttttgtagctcctgtaatacttcttatagtattaatcttcttctgtgttgtaattaagtaggtaaatatgtgttctagtgcttgcttttgtttttaagaa |
32101496 |
T |
|
| Q |
217 |
aattaaattagactaacattcaagaatatttattaaatcaagcacaatagttattatagttgtaatcaaagcttttttgattgtgtctataaactgttta |
316 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| ||| ||||||||||||||||| |||||| |
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| T |
32101497 |
aattaaatttgcctaacattcaagaatatttattaaatcaagcacattaattattatagtcataatcaaag-tttgttgattgtgtctataaattgttta |
32101595 |
T |
|
| Q |
317 |
atgtt |
321 |
Q |
| |
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||||| |
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| T |
32101596 |
atgtt |
32101600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 32102884 - 32103187
Alignment:
| Q |
17 |
agaccagccaagcttgtgatattggtgaatttaatccatgagtgttaatactcccggtcctcattttcgtgtcattcatcttttttggtcaatattttgt |
116 |
Q |
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|||||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||| |
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| T |
32102884 |
agaccaaccaaacttgtgatattggtgaatttaatccacgagtgttaatactcctagtcctcattttcgtgtccttcatattttttgatcaatattttgt |
32102983 |
T |
|
| Q |
117 |
ttttgtagctcctgtaatacttcttatagtattaatcttcttctatgttgtaattaattaggttaatatgtgttctagtgctggcttttgtttttatgaa |
216 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
32102984 |
ttttgtagatcctgtaatacttcttataatattaatcttcttatgtgttgtaattaagtaggttaatatgtgttctagtgcttgcttttgtttttaagaa |
32103083 |
T |
|
| Q |
217 |
aattaaattagactaacattcaagaatatttattaaatcaagcacaatagttattatagttgtaatcaaagcttttttgattgtgtctataaactgttta |
316 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||||| |
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| T |
32103084 |
aattaaattagactaacattcaagaatatttatcaaatcaagcacaataattattatagtcataatcaaa-aaatttcgattgtgtctataaactgttta |
32103182 |
T |
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| Q |
317 |
atgtt |
321 |
Q |
| |
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||||| |
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| T |
32103183 |
atgtt |
32103187 |
T |
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