View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17961_low_19 (Length: 321)

Name: NF17961_low_19
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17961_low_19
NF17961_low_19
[»] chr6 (22 HSPs)
chr6 (23-305)||(7132101-7132383)
chr6 (23-193)||(7138059-7138229)
chr6 (23-193)||(7135136-7135306)
chr6 (43-296)||(6423710-6423963)
chr6 (36-259)||(6427023-6427246)
chr6 (34-186)||(19633012-19633167)
chr6 (33-264)||(8913408-8913639)
chr6 (48-170)||(6596238-6596360)
chr6 (46-172)||(10579099-10579225)
chr6 (202-304)||(6403366-6403468)
chr6 (23-101)||(6417092-6417170)
chr6 (226-316)||(6594139-6594229)
chr6 (46-305)||(7993550-7993797)
chr6 (31-263)||(6410532-6410765)
chr6 (32-92)||(14809708-14809768)
chr6 (33-82)||(28935357-28935406)
chr6 (34-101)||(6593920-6593987)
chr6 (47-82)||(9412143-9412178)
chr6 (46-92)||(6395546-6395592)
chr6 (183-257)||(10579302-10579376)
chr6 (45-101)||(6403578-6403634)
chr6 (32-92)||(14821393-14821453)
[»] chr4 (12 HSPs)
chr4 (32-92)||(553768-553828)
chr4 (52-101)||(571330-571379)
chr4 (60-92)||(1547718-1547750)
chr4 (55-103)||(3437630-3437678)
chr4 (41-75)||(53760289-53760323)
chr4 (23-92)||(661867-661936)
chr4 (39-84)||(1545881-1545926)
chr4 (23-92)||(1755562-1755631)
chr4 (226-263)||(3438186-3438223)
chr4 (32-85)||(8186346-8186399)
chr4 (54-103)||(55907684-55907733)
chr4 (23-103)||(21833255-21833335)
[»] chr1 (4 HSPs)
chr1 (136-296)||(33161000-33161160)
chr1 (23-103)||(7555196-7555276)
chr1 (29-92)||(19467415-19467478)
chr1 (34-92)||(33161207-33161265)
[»] chr7 (3 HSPs)
chr7 (23-101)||(10615713-10615791)
chr7 (32-101)||(10169037-10169106)
chr7 (32-101)||(10176562-10176631)
[»] chr3 (3 HSPs)
chr3 (33-101)||(51763378-51763446)
chr3 (23-101)||(13469627-13469705)
chr3 (43-92)||(1657536-1657585)
[»] chr8 (8 HSPs)
chr8 (23-85)||(5766583-5766645)
chr8 (23-85)||(14004159-14004221)
chr8 (52-101)||(21236154-21236203)
chr8 (56-92)||(32151977-32152013)
chr8 (23-101)||(17635634-17635712)
chr8 (43-92)||(28246056-28246105)
chr8 (44-89)||(34935986-34936031)
chr8 (45-101)||(17642935-17642991)
[»] chr2 (1 HSPs)
chr2 (54-103)||(1036620-1036669)
[»] chr5 (2 HSPs)
chr5 (42-85)||(28532829-28532872)
chr5 (35-91)||(28661184-28661240)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 305
Target Start/End: Complemental strand, 7132383 - 7132101
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  7132383 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacatgtttctctacaacaac 7132284  T
Q  123 gatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcact 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7132283 gatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaactaacttcattaatggaattcact 7132184  T
Q  223 gtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttg 305  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7132183 gtatgttatccaagtggcgatgtatacaacatttgaatcttaggtgcacatattttctgaatgatgaacatgtttctgagttg 7132101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 7138229 - 7138059
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  7138229 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtttctctacaacaac 7138130  T
Q  123 gatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaa 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  7138129 gatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccttttggtgcacaa 7138059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 7135306 - 7135136
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||    
T  7135306 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtgtctctacaacaac 7135207  T
Q  123 gatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaa 193  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||| ||||    
T  7135206 gatctgttacttattgccgattgttttccaatgcacaaagaactcaaccttggtcaccttttggtgcacaa 7135136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 296
Target Start/End: Complemental strand, 6423963 - 6423710
Alignment:
Q  43 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccga 142  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||||  |  | |||||||| ||||| ||| ||||||||| | ||| |    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgttatagcatgtttctctccaacaccgacctgttacttgtggccaa 6423864  T
Q  143 ttgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcga 242  Q
    |||||| ||| |||| ||||||||||||||    | ||||||||| | | || |||| || |||||||||||||||| |  | ||||||||||||| | |    
T  6423863 ttgtttcccattgctcaaagaactcaacctcaaacgccctttggtcatcgatgaaactaatttcattaatggaattcgcaatttgttatccaagtgtcaa 6423764  T
Q  243 tgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtt 296  Q
    ||||||||||||||| |||||   ||||  ||||||||||| ||| ||||||||    
T  6423763 tgtatacaacatttgaatcttgactgcatttattttctgaaggatcaacatgtt 6423710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 259
Target Start/End: Complemental strand, 6427246 - 6427023
Alignment:
Q  36 tttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttactta 135  Q
    ||||||| ||| ||||||| || |||||||||||| |||||||||||||| | ||||  ||||| |  ||| ||| |||  ||||||||||||| ||  |    
T  6427246 tttcctgtaaacgggttgcaagttttctcccaaaatattacaactttgacctttctcacttgttacggtacttttttctgtaacaacgatctgtcaccca 6427147  T
Q  136 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaa 235  Q
    |||  |||||||| ||  |||| ||| ||||||||||   |||||||||||| | |||| |  | ||||||||||||  |||||||||||||||||||||    
T  6427146 ttgttgattgtttccctttgctcaaacaactcaacctccatcaccctttggtcatcaataagcctaacttcattaattcaattcactgtatgttatccaa 6427047  T
Q  236 gtggcgatgtatacaacatttgga 259  Q
    ||| | ||||||||||||||||||    
T  6427046 gtgtccatgtatacaacatttgga 6427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 19633167 - 19633012
Alignment:
Q  34 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttact 133  Q
    |||||||  ||||||||||||||||||||||| ||| ||||||||||||||| ||||||  |||  |  | | |||||||||||||||||| ||||||||    
T  19633167 cctttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacctctctcacttgcactcacatgtttctctacaacaacgaactgttact 19633068  T
Q  134 ---tattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttgg 186  Q
        |||||||||||||| ||| || | |||||||||||||| | | |||||||||    
T  19633067 caacattgccgattgtttcccattgttgaaagaactcaacctcgcttaccctttgg 19633012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 264
Target Start/End: Original strand, 8913408 - 8913639
Alignment:
Q  33 acctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttac 132  Q
    ||||||||||| |||||||||| || ||| ||  |||| |||||||||||||| |||||| |||||||||| | ||||||  | |||||| | ||||||     
T  8913408 acctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgttccaacatgtttcttgataacaacaaactgttat 8913507  T
Q  133 ttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatc 232  Q
    |  |||  | |||||| ||  |||||||||||||||||||| ||||| | ||||| ||| |||| |  ||  || |||||  |||||||  | |||||||    
T  8913508 tcgttgttggttgtttccctttgcttaaagaactcaaccttagtcacaccttggtcaactatcacagtaatgtctttaattaaattcaccatttgttatc 8913607  T
Q  233 caagtggcgatgtatacaacatttggatctta 264  Q
    |||||| | |||| |||||||||||| |||||    
T  8913608 caagtgtcaatgtttacaacatttggttctta 8913639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 6596238 - 6596360
Alignment:
Q  48 gggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgtt 147  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||  |||||| |  |  ||||||||||| || ||  ||||||| ||||| |||||||    
T  6596238 gggttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctataaactttctctacaaaaatgacttgttactcattgctgattgtt 6596337  T
Q  148 ttccaatgcttaaagaactcaac 170  Q
    | ||| |||| ||||||||||||    
T  6596338 tcccattgctcaaagaactcaac 6596360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 10579099 - 10579225
Alignment:
Q  46 atgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattg 145  Q
    ||||||| |||||||||||||||||||| ||||||||||||  | ||  |||||| | |   ||||||||||| || ||  |||||||  ||||||||||    
T  10579099 atgggttacgagctttctcccaaaacataacaactttgacaagtttcacttgttctactgactttctctacaaaaatgacttgttactcgttgccgattg 10579198  T
Q  146 ttttccaatgcttaaagaactcaacct 172  Q
    ||| ||| |||| ||||||||||||||    
T  10579199 tttcccattgctcaaagaactcaacct 10579225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 304
Target Start/End: Complemental strand, 6403468 - 6403366
Alignment:
Q  202 acttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctga 301  Q
    |||| |||||||||||  ||| | |||||||||||||  ||||||||||||||||||||||||    ||  |||||||||||||||  ||||||| ||||    
T  6403468 actttattaatggaatatactctctgttatccaagtgtagatgtatacaacatttggatcttaataacagttattttctgaatgatttacatgttgctga 6403369  T
Q  302 gtt 304  Q
    |||    
T  6403368 gtt 6403366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 6417170 - 6417092
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    |||||||| ||| ||||| | ||||||||| ||||||||||||||||| | |||||||||||| ||||||  |||||||    
T  6417170 caaccaacccacttttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 6594139 - 6594229
Alignment:
Q  226 tgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgcctttgcttct 316  Q
    ||||||||||||| |||||||||||||||||| |||||| || | |   ||||||||||||| |||||||| | |||||| ||||| ||||    
T  6594139 tgttatccaagtgtcgatgtatacaacatttgaatcttaagtacgctcgttttctgaatgatcaacatgttgccgagttgtctttgtttct 6594229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 305
Target Start/End: Original strand, 7993550 - 7993797
Alignment:
Q  46 atgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattg 145  Q
    |||| |||||||| ||  ||||||||||||||| |||||| |||||| ||||||||||||| |||||    ||   ||  |||||||| |||||| ||||    
T  7993550 atggtttgcgagcatttgcccaaaacattacaattttgacctctctcaattgttccaatacttttcttggtaagggcggcctgttactcattgccaattg 7993649  T
Q  146 ttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgt 245  Q
    ||| ||  |||| |||||||||||||| ||||            ||||| | || | || |||||||| | |||||| | |||| |||||||| ||||||    
T  7993650 tttccctttgctcaaagaactcaacctcggtc------------acaatgacactagctacattaatgaatttcactatttgttgtccaagtgtcgatgt 7993737  T
Q  246 atacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttg 305  Q
    ||||||||||| |||||||   | |  |||||||||||||||  ||||||| ||||||||    
T  7993738 atacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagttg 7993797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 263
Target Start/End: Complemental strand, 6410765 - 6410532
Alignment:
Q  31 acacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgtt 130  Q
    ||||||||||   ||||||||||| || ||||||||||||||||||||||||||| ||| ||  |||  || |   |||  |  | |||||| | ||| |    
T  6410765 acacctttcccataaatgggttgcaagttttctcccaaaacattacaactttgacctctttcacttgcccctacgtgttatttgataacaacaacctgat 6410666  T
Q  131 acttattgccgattgttttccaatgcttaaagaactcaa-ccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgtt 229  Q
    |||  |||| |||||||| ||| |||| ||||||||||| |||   |||||||| | | ||  ||| | | || ||||||||||||||||||| | ||||    
T  6410665 actctttgctgattgtttcccattgctcaaagaactcaaacctcattcacccttcgttcaagtatcgatctaatttcattaatggaattcactatctgtt 6410566  T
Q  230 atccaagtggcgatgtatacaacatttggatctt 263  Q
    ||||||||| | |||| |||||||| ||||||||    
T  6410565 atccaagtgccaatgtttacaacatatggatctt 6410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 14809768 - 14809708
Alignment:
Q  32 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 92  Q
    ||||||||| ||||| ||||||| || ||||||||||||||||||||||||| | ||||||    
T  14809768 cacctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttggcctctctc 14809708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 28935406 - 28935357
Alignment:
Q  33 acctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 82  Q
    ||||||||  |||| ||||||||||| |||||||||||||||||||||||    
T  28935406 acctttcccacaaaagggttgcgagccttctcccaaaacattacaacttt 28935357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 6593920 - 6593987
Alignment:
Q  34 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    |||||||  ||||||| ||||||| |||||| ||||| |||||||||||||| ||| || ||||||||    
T  6593920 cctttccctcaaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 9412178 - 9412143
Alignment:
Q  47 tgggttgcgagctttctcccaaaacattacaacttt 82  Q
    |||||||||||||||||||||||| |||||||||||    
T  9412178 tgggttgcgagctttctcccaaaatattacaacttt 9412143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 6395592 - 6395546
Alignment:
Q  46 atgggttgcgagctttctcccaaaacattacaactttgacatctctc 92  Q
    ||||||||| |||| |||||||||| |||||||||||||| ||||||    
T  6395592 atgggttgcaagctctctcccaaaatattacaactttgacctctctc 6395546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 10579302 - 10579376
Alignment:
Q  183 ttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttg 257  Q
    ||||| ||||||| |||  | ||||||||||||||||||| | ||||||| ||||| | |||||| |||||||||    
T  10579302 ttggtcaacaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttg 10579376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 6403634 - 6403578
Alignment:
Q  45 aatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    |||||||||||||||||||||| |||  | || |||||||| ||||| |||||||||    
T  6403634 aatgggttgcgagctttctcccgaaaggtcactactttgacctctcttgattgttcc 6403578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 14821453 - 14821393
Alignment:
Q  32 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 92  Q
    ||||||||| ||||||||||||||  ||||||| |  ||| ||||||||||||| ||||||    
T  14821453 cacctttcccgcaaatgggttgcggactttctcacgtaacgttacaactttgacctctctc 14821393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 553828 - 553768
Alignment:
Q  32 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 92  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  553828 caccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctc 553768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 571379 - 571330
Alignment:
Q  52 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 571330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 1547718 - 1547750
Alignment:
Q  60 ttctcccaaaacattacaactttgacatctctc 92  Q
    |||||||||||||||||||||||||||||||||    
T  1547718 ttctcccaaaacattacaactttgacatctctc 1547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 3437630 - 3437678
Alignment:
Q  55 gagctttctcccaaaacattacaactttgacatctctcgattgttccaa 103  Q
    |||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaa 3437678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 53760289 - 53760323
Alignment:
Q  41 tgcaaatgggttgcgagctttctcccaaaacatta 75  Q
    ||||||||||||||||||||||| |||||||||||    
T  53760289 tgcaaatgggttgcgagctttcttccaaaacatta 53760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 661936 - 661867
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 92  Q
    |||||||  |||| |||| || ||||| |||||||||||||||||| | ||||||||||| || ||||||    
T  661936 caaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctc 661867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 1545926 - 1545881
Alignment:
Q  39 cctgcaaatgggttgcgagctttctcccaaaacattacaactttga 84  Q
    ||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  1545926 cctgccaatgggttgcgatctttctctcaaaatattacaactttga 1545881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 1755631 - 1755562
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 92  Q
    |||||||||| || ||||  | || ||||||| ||||||||| ||||| |||||||||||||| ||||||    
T  1755631 caaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaactttgacctctctc 1755562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 3438186 - 3438223
Alignment:
Q  226 tgttatccaagtggcgatgtatacaacatttggatctt 263  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  3438186 tgttatccaagtgtcaatgtatacaacatttggatctt 3438223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 8186346 - 8186399
Alignment:
Q  32 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 85  Q
    |||| ||||||||||||| ||||||| | |||||| ||| ||||||||||||||    
T  8186346 caccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgac 8186399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 55907684 - 55907733
Alignment:
Q  54 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 103  Q
    ||||||||||||||||| |||||||||||||  ||||||  |||||||||    
T  55907684 cgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 21833255 - 21833335
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 103  Q
    |||| ||| |||| |||| ||| |||||||||||| |||  | ||||||||||| |||||||| ||||||  |||||||||    
T  21833255 caacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaa 21833335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 296
Target Start/End: Complemental strand, 33161160 - 33161000
Alignment:
Q  136 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaa 235  Q
    ||||||||||||| ||  |||| ||| |||||||||| |||||||||  | | |||||||| || ||||||||||||||| |||||| | | ||||||||    
T  33161160 ttgccgattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctcttatccaa 33161061  T
Q  236 gtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtt 296  Q
     || | || ||||||| |||||||||| |    ||| ||||||||||||||| ||||||||    
T  33161060 ctgtcaatatatacaatatttggatctaaatcacacttattttctgaatgatcaacatgtt 33161000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 7555276 - 7555196
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 103  Q
    |||||||| |||| | ||||||| ||| |||||||||||||||||||| ||||||||||| || || |||  |||||||||    
T  7555276 caaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 19467415 - 19467478
Alignment:
Q  29 acacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 92  Q
    ||||||| |||| |||||||||||||||| |||| | ||||| |||||||||||||| ||||||    
T  19467415 acacaccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctc 19467478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 33161265 - 33161207
Alignment:
Q  34 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 92  Q
    ||||||| || ||||| |||||| |||||||||||| ||||| ||||||||| ||||||    
T  33161265 cctttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctc 33161207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 10615791 - 10615713
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    |||||||| |||  |||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||  |||||||    
T  10615791 caaccaacccacagttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 10169037 - 10169106
Alignment:
Q  32 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  |||||||    
T  10169037 caccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttcc 10169106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 10176562 - 10176631
Alignment:
Q  32 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  |||||||    
T  10176562 caccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttcc 10176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 51763378 - 51763446
Alignment:
Q  33 acctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    ||||||||| ||||||||||||||| ||| || ||||| |||||||||||||||||||||  |||||||    
T  51763378 acctttcctacaaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcc 51763446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 13469627 - 13469705
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    |||||||| |||  |||||||||||||||| ||||||||||||||||| | ||||||  |||| ||||||  |||||||    
T  13469627 caaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcc 13469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 1657585 - 1657536
Alignment:
Q  43 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 92  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  1657585 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 1657536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 5766583 - 5766645
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 85  Q
    |||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  5766583 caaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 5766645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 14004221 - 14004159
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 85  Q
    |||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  14004221 caaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 14004159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 21236203 - 21236154
Alignment:
Q  52 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    ||||||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  21236203 tgcgagcattctcccaaaatactacaactttgacatctctcaattgttcc 21236154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 32152013 - 32151977
Alignment:
Q  56 agctttctcccaaaacattacaactttgacatctctc 92  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctc 32151977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 17635634 - 17635712
Alignment:
Q  23 caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    |||||||| |||| ||||  | |||||||| |||||||||||||  || |||||||||||||| ||||||  |||||||    
T  17635634 caaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 28246056 - 28246105
Alignment:
Q  43 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 92  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  28246056 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 28246105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 34935986 - 34936031
Alignment:
Q  44 aaatgggttgcgagctttctcccaaaacattacaactttgacatct 89  Q
    |||||| ||||||| |||||| ||||| ||||||||||||||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgacatct 34936031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 17642935 - 17642991
Alignment:
Q  45 aatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 101  Q
    |||||||| | |||||||||||| || |||||||||||||| ||||||  |||||||    
T  17642935 aatgggttacaagctttctcccagaatattacaactttgacctctctcacttgttcc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 1036620 - 1036669
Alignment:
Q  54 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 103  Q
    ||||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  1036620 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 28532872 - 28532829
Alignment:
Q  42 gcaaatgggttgcgagctttctcccaaaacattacaactttgac 85  Q
    |||||||| ||||||||||| || ||||||||||||||||||||    
T  28532872 gcaaatggattgcgagctttttcacaaaacattacaactttgac 28532829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 28661184 - 28661240
Alignment:
Q  35 ctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctct 91  Q
    |||||| ||| |||| ||| ||||||||  ||||||||||||||||||||| |||||    
T  28661184 ctttcccgcacatggtttgggagctttcagccaaaacattacaactttgacctctct 28661240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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