View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_20 (Length: 307)
Name: NF17961_low_20
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_20 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 51458185 - 51458467
Alignment:
| Q |
17 |
catttcctgatcaattctttgttagcactttataactattgannnnnnnctccaagtgaatattttattatgaggaaaattaaatgtttattannnnnnn |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458185 |
catttcctgatcaattctttgttagcactttataactattgatttttttctccaagtgaatattttattatgaggaaaattaaatgtttatttttttttt |
51458284 |
T |
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| Q |
117 |
n---gtaatttggctataaggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458285 |
ttttgtaatttggctataaggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagca |
51458384 |
T |
|
| Q |
214 |
ccttgagcaagataagagggagctacatgatgatggggaggcggttgatatgtttcaccaactctttgacactaatgatgatg |
296 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51458385 |
ccttgagcaagataagagggagctacatggtgatggggaggcggttgatatgtttcaccaactctctgacactaatgatgatg |
51458467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 51482835 - 51482950
Alignment:
| Q |
132 |
aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag |
231 |
Q |
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|||||||||||||||||||||| ||| ||||| || | ||| |||||| ||| || |||| ||||| |||| | ||||||||||||||||| ||||| |
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| T |
51482835 |
aggtaaatgtgttgactcatattgctgaagtgaaattgaaatctgagggcattgctgccattgagaaactgacacaaaagcaccttgagcaagacaagag |
51482934 |
T |
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| Q |
232 |
ggagctacatgatgat |
247 |
Q |
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| T |
51482935 |
ggagctacatggtgat |
51482950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 51499733 - 51499790
Alignment:
| Q |
190 |
cattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat |
247 |
Q |
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| T |
51499733 |
cattaagaaattgacagaaaagcaccttgagcaagacaagagggagctacatggtgat |
51499790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 70 - 292
Target Start/End: Original strand, 43162513 - 43162733
Alignment:
| Q |
70 |
aagtgaatattttattatgaggaaaattaaatgtttattannnnnnnngtaatttggctataaggtaaatgtgttgactcatatcgctaaagtggaacta |
169 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43162513 |
aagtgaatattttattatgaggaaaattaaatgttt--tcttttttttgtaatttgactataaggtaaatgtgttgacgcatatcgctaaagtggaactg |
43162610 |
T |
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| Q |
170 |
aaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgatggggaggcggttgatatgtttc |
269 |
Q |
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|||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| || ||| |||| | |||| |||||| || |||| |
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| T |
43162611 |
aaacctgaggaaattaatgtcattaagaaattgagacagaagcaccttgagcaagataagagggacctttatggtgatcgagaggtggttgaaatatttc |
43162710 |
T |
|
| Q |
270 |
accaactctttgacactaatgat |
292 |
Q |
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| | || || |||||||||||| |
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| T |
43162711 |
atcgacactccgacactaatgat |
43162733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 20867142 - 20867027
Alignment:
| Q |
132 |
aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag |
231 |
Q |
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|||||||||||||||||||| | |||||||||||||| || ||| | |||| || ||||| ||||| || ||||||||||||||||| ||||| |
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| T |
20867142 |
aggtaaatgtgttgactcatgttgctaaagtggaactggaaactgtgagcattactgcaattaaaaaattaacagaaaagcaccttgagcaagacaagag |
20867043 |
T |
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| Q |
232 |
ggagctacatgatgat |
247 |
Q |
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||||||||||| |||| |
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| T |
20867042 |
ggagctacatggtgat |
20867027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 27398420 - 27398476
Alignment:
| Q |
191 |
attaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat |
247 |
Q |
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||||||||||||| | ||||||||||||||||| |||||||||||||||| |||| |
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| T |
27398420 |
attaagaaattgaaacaaaagcaccttgagcaagacaagagggagctacatggtgat |
27398476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 135888 - 135782
Alignment:
| Q |
132 |
aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag |
231 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||||| || ||||| |||| || |||||||||||||| | ||||||||||||||||| ||||| |
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| T |
135888 |
aggtaaatgtgttgactcatattgctaa-gtggaactggaaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagcaagacaagag |
135790 |
T |
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| Q |
232 |
ggagctac |
239 |
Q |
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|||||||| |
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| T |
135789 |
ggagctac |
135782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 36549804 - 36549861
Alignment:
| Q |
190 |
cattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat |
247 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||| |||||||| |||| |
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| T |
36549804 |
cattaagaaattgatacaaaagcaccttgagcaagataagagggtgctacatggtgat |
36549861 |
T |
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