View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17961_low_22 (Length: 273)
Name: NF17961_low_22
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_22 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 43141927 - 43142200
Alignment:
| Q |
1 |
tagtaatgtgcaaattggtttgtaacatgatgactttt-ttgttggtgaattatgaatgtatgttacctgcaagaacttaatgatgttgctagctccaaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43141927 |
tagtaatgtgcaaattggtttgtaacatgatgattttttttgttggtgaattatgaatgtatgttacctgcaagaacttaatgatgttgctagctccaaa |
43142026 |
T |
|
| Q |
100 |
gactctatgagcaatggtgaacttgagtggatcagttggaggaaaatacggagctaacacacacttttcaacacacctgcgacggagaatcttgcaggca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43142027 |
gactctatgagcaatggtgaacttgagtggatcagttggaggaaaatacggagctaacacacacttttcaacgcacctgcgacggagaatcttgcaggca |
43142126 |
T |
|
| Q |
200 |
gcacaagggctaacaataattggtggtggaggagatggtggttgaggagcagcagagggaggagaatattgaga |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43142127 |
gcacaagggctaacaataattggtggtggaggagatggtggttgaggagcagcagagggaggagaatattgaga |
43142200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 35958687 - 35958646
Alignment:
| Q |
83 |
atgttgctagctccaaagactctatgagcaatggtgaacttg |
124 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
35958687 |
atgttgctagcaccaaaaactctatgagcaatggtaaacttg |
35958646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 22428009 - 22428092
Alignment:
| Q |
64 |
tacctgcaagaacttaatgatgttgctagctccaaagactctatgagcaatggtgaacttgagtggatcagttggaggaaaata |
147 |
Q |
| |
|
|||||| ||||| || |||||||||||||| ||||| ||||||||||||||||| |||||| || ||||| ||||||||||| |
|
|
| T |
22428009 |
tacctgtaagaatttgatgatgttgctagcaccaaaaactctatgagcaatggtaaacttggcagggtcagtaggaggaaaata |
22428092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 28057599 - 28057640
Alignment:
| Q |
83 |
atgttgctagctccaaagactctatgagcaatggtgaacttg |
124 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
28057599 |
atgttgctagcaccaaaaactctatgagcaatggtaaacttg |
28057640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University