View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_26 (Length: 261)
Name: NF17961_low_26
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 32101868 - 32101992
Alignment:
| Q |
19 |
acaaatccaaaactagctacatctatataggagattattttcattataagaagccaaaatgcaatctgaacgtgaaaaacgttg-ttaaacaagacatat |
117 |
Q |
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| T |
32101868 |
acaaaaccaaaactagctacacctacataggagattattttcattataagaagccaaaatgcaatctgaacatgaaaaacgttgtttagacaagacatat |
32101967 |
T |
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| Q |
118 |
atgagaccaacccaagcataacttc |
142 |
Q |
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| T |
32101968 |
atgagaccaacccaagcataacttc |
32101992 |
T |
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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 32103421 - 32103558
Alignment:
| Q |
19 |
acaaatccaaaactagctacatctatataggagattattttcattataagaagccaaaatgcaatctgaacgtgaaaaacgttg--------------tt |
104 |
Q |
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||||||||||||||||||||| | | |||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||| || |
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| T |
32103421 |
acaaatccaaaactagctacaccaacataggagatttttttcattataagaagccaaaattcaatatgaacatgaaaaacgttgtggagccattcatatt |
32103520 |
T |
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| Q |
105 |
aaacaagacatatatgagaccaacccaagcataacttc |
142 |
Q |
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| T |
32103521 |
agacaagacatatatgagaccaacccaagcataacttc |
32103558 |
T |
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