View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_28 (Length: 249)
Name: NF17961_low_28
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 37558196 - 37558422
Alignment:
| Q |
4 |
atgtcgaagaatatatatttttgcaattagcctctactttgtttgtttgaaatttaccatttctaattacttttttatgtagccatatgtggaggaaagc |
103 |
Q |
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| T |
37558196 |
atgtcgaacaatttatatttttgcaattagcctctactttgtttgtttgaaacttaccatttctaattacttttttatgtagccatatgtggaggaaagc |
37558295 |
T |
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| Q |
104 |
aggaagataaaggaaaaacagaaggaagcaatgatcactgacaataaacagaagagcactgaagatcttaagatggatgaacagaagagccctgaagttc |
203 |
Q |
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| T |
37558296 |
aggaagataaaggaaaaacagaaggaagcaatgatcactgacaataaacagaagagcactgaagatcttaagaaggatgaacagaagagcactgaagttc |
37558395 |
T |
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| Q |
204 |
ttaagaaggatgaaaagaagagcactc |
230 |
Q |
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| T |
37558396 |
ttaagaaggatgaaaagaagagcactc |
37558422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 37558375 - 37558432
Alignment:
| Q |
150 |
aacagaagagcactgaagatcttaagatggatgaacagaagagccctgaagttcttaa |
207 |
Q |
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| T |
37558375 |
aacagaagagcactgaagttcttaagaaggatgaaaagaagagcactcaaggtcttaa |
37558432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 41553601 - 41553767
Alignment:
| Q |
17 |
tatatttttgcaattagcctctactttgtttgtttgaaatttaccatttctaattacttttttatgtagccatatgtggaggaaagcaggaagataaagg |
116 |
Q |
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| T |
41553601 |
tatagttttgcaattagcctatagttggtttatttgaaatttgcaacttctaattgcttttc-atttagccatatgtagaggaaagcaagaaaataaagg |
41553699 |
T |
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| Q |
117 |
aaaaacagaaggaagcaatgatcactgacaataaacagaagagcactgaagatcttaagatggatgaa |
184 |
Q |
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| T |
41553700 |
aaaaaaacaaagaagcaatgatcattgacattaaacagaagagcacccaagatcttaagagggatgaa |
41553767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 34257041 - 34257111
Alignment:
| Q |
47 |
tgtttgaaatttaccatttctaattacttttttatgtagccatatgtggaggaaagcaggaagataaaggaa |
118 |
Q |
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| T |
34257041 |
tgtttgaaattcgccatttctaattacttttc-atgtagccatatgaagaggcaagcatgaagataaaggaa |
34257111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 34257377 - 34257447
Alignment:
| Q |
47 |
tgtttgaaatttaccatttctaattacttttttatgtagccatatgtggaggaaagcaggaagataaaggaa |
118 |
Q |
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| T |
34257377 |
tgtttgaaatttgccacttctaattacatttc-atgtagccatatgaagaggaaagcatgaagataaaggaa |
34257447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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