View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_29 (Length: 248)
Name: NF17961_low_29
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_29 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 22422 - 22635
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22422 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
22521 |
T |
|
| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
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||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22522 |
ctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtccttgaa |
22621 |
T |
|
| Q |
213 |
aatcttgccggaag |
226 |
Q |
| |
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|||||||||||||| |
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| T |
22622 |
aatcttgccggaag |
22635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 10197666 - 10197453
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10197666 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
10197567 |
T |
|
| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
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||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10197566 |
ctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtccttgaa |
10197467 |
T |
|
| Q |
213 |
aatcttgccggaag |
226 |
Q |
| |
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|||||||||||||| |
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| T |
10197466 |
aatcttgccggaag |
10197453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 19456933 - 19457143
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
19456933 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgctgaagaagtcgatctttc |
19457032 |
T |
|
| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
| |
|
||||||||||||| ||||| | |||||||| ||||| |||||||||||| ||||||| || |||||||||||||| ||||| ||||| || ||||||||| |
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|
| T |
19457033 |
ctccgatctcaagcactggcaaaacctcaccgacggcgaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtccttgaa |
19457132 |
T |
|
| Q |
213 |
aatcttgccgg |
223 |
Q |
| |
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||||| ||||| |
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|
| T |
19457133 |
aatctcgccgg |
19457143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 25026158 - 25025945
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
25026158 |
cagaccgattctgtatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctctttctggaccgccgaagaagtcgatctttc |
25026059 |
T |
|
| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
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||||||||| | |||||||||||||||| ||||| |||||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||| ||| |
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| T |
25026058 |
ctccgatcttcaacactggaacaacctcaccgacggcgaacgccacttcatctctcacatcctcgccttcttcgccgcctccgacggtatcgtcctcgaa |
25025959 |
T |
|
| Q |
213 |
aatcttgccggaag |
226 |
Q |
| |
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||||| |||||||| |
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| T |
25025958 |
aatctcgccggaag |
25025945 |
T |
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Back To:
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