View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_3 (Length: 505)
Name: NF17961_low_3
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 488
Target Start/End: Original strand, 38932520 - 38932995
Alignment:
| Q |
11 |
cagagacaccaacacaacgtagctcagggtgattagcatcccatgtttcagtcagacctgcttctgactcaatgcggttgtcaggttccaatgcatcgat |
110 |
Q |
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| T |
38932520 |
cagagacaccaacacaacgtagctcagggtgattagcatcccatgtttcagtcagacctgcttctgactcaatgctgttgtcaggttccaatgcatcgat |
38932619 |
T |
|
| Q |
111 |
gctatctagttggcacgactcaatttgatgacgtggtggaagctgtcgtgctgaacataagaagagtaacaaacaaagtgtgatcagaagagattttgtc |
210 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38932620 |
gctatctagttggcacgactcactttgatgacgtggtggaagctgtcgtgctgaacagaagaagagtaacaaacaaagtgtgatcagaagagattttgtc |
38932719 |
T |
|
| Q |
211 |
tttgccatgatagctg---aactgtggagattgttatgtagtga-tttatttatagaaatgtagagaaggttaaacgatggacacgtaagtgaagcaatg |
306 |
Q |
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||||||||| |||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38932720 |
tttgccatgctagctgaacaactgtggagattgttatgtagttattttatttatagaaatgtagagaaggttaaacgatggacacgtaagtgaagcaatg |
38932819 |
T |
|
| Q |
307 |
tggacattcttcaccatgcatgcatatcaaacccttcattcttacacctcatcatgctttcattaatgccgcagcggtgccaannnnnnnnacaagttca |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38932820 |
tggacattcttcaccatgcatgcatatcaaacccttcattcttacacctcatcatgctttcattaatgccgcagcggtgccaattttttttacaagttca |
38932919 |
T |
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| Q |
407 |
acgaatgtgactgtgagttcatcttctcatggttaaggtagataaatgtgagttcatcttctataatatcaacaaagacatt |
488 |
Q |
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| T |
38932920 |
acgaa------tgtgagttcatcttctcatggttaaggtagatatatgtgagttcatcttatataatatcaacaaagacatt |
38932995 |
T |
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