View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_30 (Length: 247)
Name: NF17961_low_30
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_30 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 51458444 - 51458674
Alignment:
| Q |
1 |
aactctttgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaa |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458444 |
aactctctgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaa |
51458543 |
T |
|
| Q |
101 |
ggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccattatctagttata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
51458544 |
ggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccattatctagctcta |
51458643 |
T |
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| Q |
201 |
gggatgcccctcatgaccatttactttctct |
231 |
Q |
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||||||||||||||||||||||| |||||| |
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| T |
51458644 |
tggatgcccctcatgaccatttaccttctct |
51458674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 30204186 - 30204068
Alignment:
| Q |
46 |
ccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattg |
145 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||| |||||| |||| |
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| T |
30204186 |
ccttagatggtgctctctgggatatttttcggagagaggatgtacctaaattggaagaatatttaaagaagcatttcagagagttcaggcatgtctattg |
30204087 |
T |
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| Q |
146 |
cattcctttaaagcaggta |
164 |
Q |
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| T |
30204086 |
ctctcctttaaagcaggta |
30204068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 51483059 - 51483175
Alignment:
| Q |
48 |
ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca |
147 |
Q |
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| T |
51483059 |
ttagatggtgctctttgggatatttttcggagagaggatgtacctgaattggaggaatatttaaagaagcatttcaaagagttcaggcatgtccattgct |
51483158 |
T |
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| Q |
148 |
ttcctttaaagcaggta |
164 |
Q |
| |
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|||||||||||||||| |
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| T |
51483159 |
ctcctttaaagcaggta |
51483175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 51499896 - 51500012
Alignment:
| Q |
48 |
ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca |
147 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| || || ||| |||||||| || |||||||||||||||||||||| |||||| | | | |
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| T |
51499896 |
ttagacggtgctctctgggatatttttcggagagaggatgttcctaagttggaggaatatttaaagaagcatttcagagagttcaggcatgtccactcct |
51499995 |
T |
|
| Q |
148 |
ttcctttaaagcaggta |
164 |
Q |
| |
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|||||||||||||||| |
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| T |
51499996 |
ctcctttaaagcaggta |
51500012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 43162722 - 43162947
Alignment:
| Q |
9 |
gacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatc |
108 |
Q |
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|||||||||||| |||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43162722 |
gacactaatgatagtgacttggtggttggaggggaccccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatata |
43162821 |
T |
|
| Q |
109 |
tagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccattatctagttatagggatgcc |
208 |
Q |
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|| | |||||||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||| | || ||||||| |
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| T |
43162822 |
taaaaaagcatttcagagagttcagacatgtcaattgcagtcctttaaagcaggtaaaatcagcttagacaattttccattatctagctctatggatgcc |
43162921 |
T |
|
| Q |
209 |
cctcatgaccatttactttctctgct |
234 |
Q |
| |
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|||| ||| ||||||||||||||||| |
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| T |
43162922 |
cctcgtgatcatttactttctctgct |
43162947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 27398527 - 27398647
Alignment:
| Q |
44 |
tcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaat |
143 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||| |||||| || |
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| T |
27398527 |
tcccttagatggtgctctttgggatatttttcggagagaggatgtacctgcattgcaggaatatctgaagaagcatttcagagagttcaggcatgtccat |
27398626 |
T |
|
| Q |
144 |
tgcattcctttaaagcaggta |
164 |
Q |
| |
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||| ||||||| || ||||| |
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| T |
27398627 |
tgctctcctttagaggaggta |
27398647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 20866876 - 20866760
Alignment:
| Q |
48 |
ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca |
147 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |||||||||| ||| || |||| |
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| T |
20866876 |
ttagatggtgctcactgggatatttttcggagagaggatgtgccgaaattgaaggaatatctgaagaagcattctggagagttcaggcatatctattgtt |
20866777 |
T |
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| Q |
148 |
ttcctttaaagcaggta |
164 |
Q |
| |
|
|||||||||||||||| |
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| T |
20866776 |
ctcctttaaagcaggta |
20866760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 135620 - 135504
Alignment:
| Q |
48 |
ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca |
147 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| || ||||| |
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| T |
135620 |
ttagatggtgctctctgggatatttttcggagagaggatgtacctaaattgaaggaatatctgatgaagcatttcagagagttcaggcatatctattgct |
135521 |
T |
|
| Q |
148 |
ttcctttaaagcaggta |
164 |
Q |
| |
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|||||||||||||||| |
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|
| T |
135520 |
ctcctttaaagcaggta |
135504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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