View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17961_low_32 (Length: 236)
Name: NF17961_low_32
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11820577 - 11820356
Alignment:
| Q |
1 |
caatattgggtttggatgtgtgccattttatttgcaagctatttttgtgtgaacatttttgtgtggagattgaatgagtggta-ctataatttgaaacta |
99 |
Q |
| |
|
|||| ||||||| |||||||||||||||| || ||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
11820577 |
caattttgggttcggatgtgtgccattttgttggcaagctatttttgtgttaatatttttgtgtggaggttgaatgagtggtaactataatttgaaacta |
11820478 |
T |
|
| Q |
100 |
agaaagaaacaataccctctacctcctggtcatttgggatggcctcttattcgaaatatattgacctttgttaaagatttttcatcaggccatcctgatt |
199 |
Q |
| |
|
|||||||| ||||||| | | || |||||||| |||||||||| ||||| | ||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11820477 |
agaaagaatcaataccttttgccatctggtcatatgggatggccatttattggcaatatgttgacctttgttaaagatttctcatcaggccatcctgatt |
11820378 |
T |
|
| Q |
200 |
cattcatcaacaaccttgtttc |
221 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
11820377 |
cattcatcaaaaaccttgtttc |
11820356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 11805160 - 11804941
Alignment:
| Q |
2 |
aatattgggtttggatgtgtgccattttatttgcaagctatttttgtgtgaacatttttgtgtggagattgaatgagtggtactataatttgaaactaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||| ||| || |||| |||||||||||||||||||||| |||||| ||||||| | |
|
|
| T |
11805160 |
aatattgggtttggatgtgtgccattttgttggcaagctatttttgtttgatcaattttatgtggagattgaatgagtggtattataatatgaaactcaa |
11805061 |
T |
|
| Q |
102 |
aaagaaacaataccctctacctcctggtcatttgggatggcctcttattcgaaatatattgacctttgttaaagatttttcatcaggccatcctgattca |
201 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| ||| | || || || | |||||||||||||| ||||| || |||||||||||| |
|
|
| T |
11805060 |
aaaaaaacaataccctctacctcctggtcatttgggatggcctctcattggcaacatgttagcttttgttaaagatttctcatctggtcatcctgattca |
11804961 |
T |
|
| Q |
202 |
ttcatcaacaaccttgtttc |
221 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
11804960 |
ttcatcaccaaccttgtttc |
11804941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 11819061 - 11818932
Alignment:
| Q |
92 |
tgaaactaagaaagaaacaataccctctacctcctggtcatttgggatggcctcttattcgaaatatattgacctttgttaaagatttttcatcaggcca |
191 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
11819061 |
tgaaactaagaaagaaacagtaccctctgcctcctggtcatttgggatggccacttattggaaatatgttgacctttgttaaagatttctcatcaggcca |
11818962 |
T |
|
| Q |
192 |
tcctgattcattcatcaacaaccttgtttc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11818961 |
tcctgattcattcatcaacaaccttgtttc |
11818932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11819110 - 11819058
Alignment:
| Q |
1 |
caatattgggtttggatgtgtgccattttatttgcaagctatttttgtgtgaa |
53 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11819110 |
caatactgggtttggatgtgtgccattttatttgcaagctatttttgtgtgaa |
11819058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University