View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17961_low_34 (Length: 229)

Name: NF17961_low_34
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17961_low_34
NF17961_low_34
[»] chr4 (29 HSPs)
chr4 (119-213)||(45569045-45569139)
chr4 (159-213)||(21879229-21879284)
chr4 (159-213)||(40018265-40018319)
chr4 (162-214)||(42639099-42639151)
chr4 (159-210)||(40136700-40136751)
chr4 (159-213)||(7544599-7544653)
chr4 (163-213)||(20047587-20047637)
chr4 (159-213)||(38903794-38903848)
chr4 (168-210)||(47147528-47147570)
chr4 (159-212)||(934507-934560)
chr4 (166-211)||(26024933-26024978)
chr4 (166-211)||(26025002-26025047)
chr4 (159-208)||(32339716-32339765)
chr4 (168-213)||(37042749-37042794)
chr4 (162-210)||(22420796-22420843)
chr4 (161-213)||(30853495-30853547)
chr4 (162-213)||(6843767-6843818)
chr4 (162-213)||(7681989-7682040)
chr4 (162-213)||(42293344-42293395)
chr4 (16-47)||(45568951-45568982)
chr4 (159-213)||(18966757-18966811)
chr4 (159-213)||(40268340-40268393)
chr4 (160-210)||(43069895-43069945)
chr4 (172-214)||(50967117-50967158)
chr4 (172-213)||(10209188-10209229)
chr4 (162-207)||(25574982-25575027)
chr4 (171-212)||(29182605-29182646)
chr4 (172-213)||(31961355-31961396)
chr4 (162-211)||(33710078-33710127)
[»] chr3 (16 HSPs)
chr3 (159-214)||(43308713-43308768)
chr3 (163-213)||(46431759-46431809)
chr3 (162-213)||(55244430-55244481)
chr3 (159-213)||(37598246-37598300)
chr3 (159-208)||(41452816-41452865)
chr3 (173-213)||(36820067-36820107)
chr3 (149-213)||(44443271-44443334)
chr3 (162-205)||(20262410-20262453)
chr3 (171-210)||(29475841-29475880)
chr3 (159-213)||(46367463-46367518)
chr3 (160-213)||(21427661-21427712)
chr3 (159-213)||(40982048-40982102)
chr3 (176-213)||(2340810-2340847)
chr3 (168-213)||(33700335-33700380)
chr3 (171-208)||(36304123-36304160)
chr3 (172-212)||(26990366-26990406)
[»] chr5 (11 HSPs)
chr5 (159-213)||(28186851-28186905)
chr5 (159-212)||(9917526-9917579)
chr5 (172-213)||(15369886-15369927)
chr5 (159-208)||(28005692-28005741)
chr5 (160-213)||(43475391-43475444)
chr5 (162-214)||(12576939-12576991)
chr5 (162-214)||(38684631-38684683)
chr5 (162-213)||(7359339-7359390)
chr5 (171-213)||(7678630-7678672)
chr5 (172-213)||(2713096-2713137)
chr5 (163-208)||(39322146-39322191)
[»] chr1 (21 HSPs)
chr1 (168-211)||(12135861-12135904)
chr1 (159-213)||(12231517-12231571)
chr1 (159-213)||(15577570-15577624)
chr1 (163-213)||(30834057-30834107)
chr1 (163-208)||(37591151-37591197)
chr1 (159-208)||(10584973-10585022)
chr1 (169-213)||(44008731-44008775)
chr1 (149-213)||(46388528-46388591)
chr1 (149-213)||(46394972-46395035)
chr1 (162-213)||(3818935-3818986)
chr1 (159-214)||(16822096-16822151)
chr1 (162-213)||(21251765-21251816)
chr1 (161-212)||(39525910-39525961)
chr1 (162-213)||(42501260-42501311)
chr1 (159-213)||(8203210-8203264)
chr1 (163-213)||(8342961-8343011)
chr1 (162-208)||(13827659-13827707)
chr1 (172-213)||(19969301-19969342)
chr1 (159-211)||(853861-853913)
chr1 (171-211)||(39515956-39515996)
chr1 (162-214)||(43423870-43423922)
[»] chr7 (16 HSPs)
chr7 (159-213)||(29653622-29653676)
chr7 (162-211)||(30144929-30144978)
chr7 (162-213)||(24549767-24549818)
chr7 (159-213)||(41483639-41483693)
chr7 (159-212)||(19262534-19262587)
chr7 (161-213)||(40139026-40139078)
chr7 (162-213)||(12966168-12966219)
chr7 (171-210)||(30664723-30664762)
chr7 (171-213)||(1569168-1569210)
chr7 (160-210)||(9797783-9797833)
chr7 (163-213)||(28858197-28858247)
chr7 (159-213)||(30914578-30914632)
chr7 (171-213)||(45601628-45601670)
chr7 (159-212)||(9191928-9191981)
chr7 (168-213)||(41461251-41461296)
chr7 (159-208)||(41578199-41578248)
[»] chr2 (20 HSPs)
chr2 (159-213)||(8197617-8197671)
chr2 (159-213)||(8202377-8202431)
chr2 (158-211)||(12026080-12026133)
chr2 (170-210)||(2906080-2906120)
chr2 (159-213)||(1626347-1626401)
chr2 (159-213)||(18188904-18188958)
chr2 (159-213)||(41779186-41779240)
chr2 (172-213)||(23915782-23915823)
chr2 (160-213)||(43832250-43832303)
chr2 (160-208)||(31254445-31254493)
chr2 (159-213)||(15836091-15836146)
chr2 (170-213)||(19024330-19024373)
chr2 (162-213)||(19235063-19235114)
chr2 (162-213)||(26784419-26784470)
chr2 (171-214)||(38435103-38435146)
chr2 (162-213)||(42149739-42149790)
chr2 (172-210)||(33625287-33625325)
chr2 (170-212)||(37481704-37481746)
chr2 (184-212)||(6230365-6230393)
chr2 (173-213)||(45640615-45640655)
[»] chr8 (18 HSPs)
chr8 (162-214)||(11733898-11733950)
chr8 (159-207)||(39760510-39760558)
chr8 (162-213)||(79179-79230)
chr8 (162-213)||(16705899-16705950)
chr8 (159-213)||(10079983-10080037)
chr8 (159-213)||(24739924-24739978)
chr8 (159-213)||(38178336-38178390)
chr8 (163-213)||(39967579-39967629)
chr8 (168-213)||(39388935-39388980)
chr8 (165-213)||(4011235-4011283)
chr8 (159-214)||(9969204-9969259)
chr8 (162-213)||(10108965-10109016)
chr8 (162-213)||(35643685-35643736)
chr8 (159-213)||(44175263-44175318)
chr8 (159-213)||(3645238-3645292)
chr8 (171-213)||(30783130-30783172)
chr8 (169-213)||(23023377-23023421)
chr8 (162-206)||(38483048-38483092)
[»] chr6 (7 HSPs)
chr6 (162-213)||(33997623-33997674)
chr6 (159-213)||(1681597-1681651)
chr6 (163-212)||(1748025-1748074)
chr6 (162-214)||(24665962-24666014)
chr6 (159-213)||(1747717-1747771)
chr6 (171-212)||(31831947-31831988)
chr6 (162-210)||(35199701-35199749)
[»] scaffold0373 (1 HSPs)
scaffold0373 (162-213)||(2380-2431)
[»] scaffold0018 (1 HSPs)
scaffold0018 (172-213)||(178509-178550)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 45569045 - 45569139
Alignment:
Q  119 cttatcccattttggttcaaacgaagcataaatgttctattatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45569045 cttatcccattttggttcaaacgaagcataaatgttctattatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 45569139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 21879229 - 21879284
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttctt-aatagtttctctt 213  Q
    |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||    
T  21879229 tatcatatctctatccaactcattcatctctagatctttcttgaatagtttctctt 21879284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 40018265 - 40018319
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||    
T  40018265 tatcatatccctatccaactcattgatctctagatctttcttaacagtttttctt 40018319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 42639099 - 42639151
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctcttg 214  Q
    ||||| ||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  42639099 catatttctatccaactcattaatcgctagatctttcttaatagtttctcttg 42639151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 40136700 - 40136751
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttct 210  Q
    ||||||||| |||||||||| ||| || ||||||||||||||||||||||||    
T  40136700 tatcatatccctatccaacttattaatttctagatttttcttaatagtttct 40136751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 7544599 - 7544653
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||| || ||| |||||||| |||||||||| |||||||||||||||||||    
T  7544599 tatcatatttcgatcaaactcattaatctctagatctttcttaatagtttctctt 7544653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 20047637 - 20047587
Alignment:
Q  163 atatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||||||||||| |||||||||| ||  |||||||||||||||    
T  20047637 atatctctatccaactcattaatctctagatcttctttaatagtttctctt 20047587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 38903794 - 38903848
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||||||| |||||||| |||| ||| | |||||||||||||||||||    
T  38903794 tatcatatctctatcaaactcattaatctttaggtctttcttaatagtttctctt 38903848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 47147570 - 47147528
Alignment:
Q  168 tctatccaactcattgatctctagatttttcttaatagtttct 210  Q
    ||||||||||||||| |||||||||| ||||||||||||||||    
T  47147570 tctatccaactcattaatctctagatctttcttaatagtttct 47147528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 934507 - 934560
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctct 212  Q
    ||||||| | |||||||||||||| |||||||||  ||||||||||||||||||    
T  934507 tatcataaccctatccaactcattaatctctagaactttcttaatagtttctct 934560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 26024933 - 26024978
Alignment:
Q  166 tctctatccaactcattgatctctagatttttcttaatagtttctc 211  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  26024933 tctcgatccaactcattaatctctagatctttcttaatagtttctc 26024978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 26025002 - 26025047
Alignment:
Q  166 tctctatccaactcattgatctctagatttttcttaatagtttctc 211  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  26025002 tctcgatccaactcattaatctctagatctttcttaatagtttctc 26025047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 32339765 - 32339716
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagttt 208  Q
    ||||||||||||||||||||| || |||||||| | ||||||||||||||    
T  32339765 tatcatatctctatccaactcgttaatctctaggtatttcttaatagttt 32339716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 37042749 - 37042794
Alignment:
Q  168 tctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||||| | |||||||||| |||||||||||||||||||    
T  37042749 tctatccaactcaataatctctagatctttcttaatagtttctctt 37042794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 22420796 - 22420843
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttct 210  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  22420796 catatctctatccaactcattaatctctagatctttctt-atagtttct 22420843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 30853547 - 30853495
Alignment:
Q  161 tcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| |||||| ||||||||| |||| |||||||||| ||||||||||||||    
T  30853547 tcatacctctatgcaactcattaatctttagatttttcataatagtttctctt 30853495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 6843818 - 6843767
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| |||||| |||||||| |||||||||| |||||||||||| ||||||    
T  6843818 catatttctatcaaactcattaatctctagatctttcttaatagtctctctt 6843767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 7681989 - 7682040
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| |||||| |||||||| |||| |||||||||||| ||||||||||||    
T  7681989 catatttctatctaactcattaatctatagatttttcttgatagtttctctt 7682040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 42293344 - 42293395
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| |||||| |||||||| || ||||||| |||||||||||||||||||    
T  42293344 catatgtctatctaactcattaatttctagatctttcttaatagtttctctt 42293395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 45568951 - 45568982
Alignment:
Q  16 aaatgaattttgaagtataaacatgtacatga 47  Q
    ||||||||||||||||||||||||||||||||    
T  45568951 aaatgaattttgaagtataaacatgtacatga 45568982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 18966811 - 18966757
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||| ||||| |||| | |||| ||||| |||||||||||||||||||    
T  18966811 tatcatatctcaatccagctcactaatctgtagatctttcttaatagtttctctt 18966757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 40268340 - 40268393
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||| |||| |||  | ||||||||||||||||||||||||||||||    
T  40268340 tatcatatctctgtccagctctgt-atctctagatttttcttaatagtttctctt 40268393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 43069895 - 43069945
Alignment:
Q  160 atcatatctctatccaactcattgatctctagatttttcttaatagtttct 210  Q
    ||||||||||||||||||| ||| | |||||||| ||||| ||||||||||    
T  43069895 atcatatctctatccaacttattaaactctagatctttctcaatagtttct 43069945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 50967117 - 50967158
Alignment:
Q  172 tccaactcattgatctctagatttttcttaatagtttctcttg 214  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  50967117 tccaactcattgatctctag-tctttcttaatagtttctcttg 50967158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 10209229 - 10209188
Alignment:
Q  172 tccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  10209229 tccaactcattaatctctagatccttcttaatagtttctctt 10209188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 25575027 - 25574982
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtt 207  Q
    ||||| || |||||||||||| |||||||||| |||||||||||||    
T  25575027 catatttcgatccaactcattaatctctagatctttcttaatagtt 25574982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 29182646 - 29182605
Alignment:
Q  171 atccaactcattgatctctagatttttcttaatagtttctct 212  Q
    |||||||||||| ||||||||||  |||||||||||||||||    
T  29182646 atccaactcattaatctctagatacttcttaatagtttctct 29182605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 31961355 - 31961396
Alignment:
Q  172 tccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||| |||||||||| |||| ||||||||||||||    
T  31961355 tccaactcatttatctctagatctttcctaatagtttctctt 31961396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 33710127 - 33710078
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctc 211  Q
    ||||| ||||||||||||||| ||||||||||   |||||||||||||||    
T  33710127 catatttctatccaactcattaatctctagatcagtcttaatagtttctc 33710078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 43308768 - 43308713
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctcttg 214  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  43308768 tatcatatctctatccaactgattaatctctagatttttcttaatagtttctcttg 43308713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 46431759 - 46431809
Alignment:
Q  163 atatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||||||||||| |||||||||| ||| |||||||||||||||    
T  46431759 atatctctatccaactcattaatctctagatcttttttaatagtttctctt 46431809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 55244481 - 55244430
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| ||||||||||||||| ||||||||||||||||||| | ||||||||    
T  55244481 catatttctatccaactcattaatctctagatttttcttaagaatttctctt 55244430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 37598246 - 37598300
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||| | |||||||||||||| |||||||||| | |||||||||||||||||    
T  37598246 tatcatacccctatccaactcattaatctctagatatatcttaatagtttctctt 37598300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 41452816 - 41452865
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagttt 208  Q
    |||||||| | ||||||||||||| |||||||||| ||||||||||||||    
T  41452816 tatcatatatttatccaactcattaatctctagatctttcttaatagttt 41452865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 36820067 - 36820107
Alignment:
Q  173 ccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  36820067 ccaactcattaatctctagatctttcttaatagtttctctt 36820107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 44443271 - 44443334
Alignment:
Q  149 aatgttctattatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||| |||||||| |||||||||||||  ||||||||||  ||||||| ||||||||||    
T  44443271 aatgttctat-atcatatccctatccaactcatcaatctctagatcattcttaaaagtttctctt 44443334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 20262410 - 20262453
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatag 205  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||    
T  20262410 catatctctacccaactcattgatctctagatctttcttgatag 20262453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 29475880 - 29475841
Alignment:
Q  171 atccaactcattgatctctagatttttcttaatagtttct 210  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  29475880 atccaactcattaatctctagatctttcttaatagtttct 29475841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 46367463 - 46367518
Alignment:
Q  159 tatcatatctctatccaactcattgatctctaga-tttttcttaatagtttctctt 213  Q
    |||||||||  ||||||||||||| ||||||||| ||||| |||||||||||||||    
T  46367463 tatcatatccttatccaactcattcatctctagatttttttttaatagtttctctt 46367518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 21427661 - 21427712
Alignment:
Q  160 atcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||| |||||||||||||||||  |||||||| | |||||||||||||||||||    
T  21427661 atcaaatctctatccaactcat--atctctaggtctttcttaatagtttctctt 21427712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 40982102 - 40982048
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||| |||||||||| |||| || ||||||| ||||||||||||| |||||    
T  40982102 tatcatatatctatccaacacattaatatctagatctttcttaatagttactctt 40982048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 2340810 - 2340847
Alignment:
Q  176 actcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  2340810 actcattaatctctagatctttcttaatagtttctctt 2340847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 33700380 - 33700335
Alignment:
Q  168 tctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||| |||||||| |||||||||| ||||||||||| |||||||    
T  33700380 tctatctaactcattaatctctagatatttcttaatagcttctctt 33700335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 36304160 - 36304123
Alignment:
Q  171 atccaactcattgatctctagatttttcttaatagttt 208  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  36304160 atccaactcattaatctctagatctttcttaatagttt 36304123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 26990406 - 26990366
Alignment:
Q  172 tccaactcattgatctctagatttttcttaatagtttctct 212  Q
    ||||||||||||||||||||||  ||||| |||||||||||    
T  26990406 tccaactcattgatctctagatccttcttgatagtttctct 26990366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 28186851 - 28186905
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||||||||||    
T  28186851 tatcatatctctatccaactcattaatctctaaatctttcttaatagtttctctt 28186905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 9917526 - 9917579
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctct 212  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||||||    
T  9917526 tatcatatctctatccaactcattgatctctatatctttctaaatagtttctct 9917579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 15369886 - 15369927
Alignment:
Q  172 tccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  15369886 tccaactcatttatctttagatttttcttaatagtttctctt 15369927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 28005741 - 28005692
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagttt 208  Q
    ||||||||| ||||| |||||||| |||||||||| ||||||||||||||    
T  28005741 tatcatatccctatcaaactcattaatctctagatctttcttaatagttt 28005692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 43475444 - 43475391
Alignment:
Q  160 atcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||| || |||||||||||| |||||| ||| |||||||||||||||||||    
T  43475444 atcatatttcgatccaactcattaatctctggatctttcttaatagtttctctt 43475391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 12576939 - 12576991
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctcttg 214  Q
    ||||| ||||| ||||||||| |||||||||| |||||||||||||| |||||    
T  12576939 catatttctattcaactcattaatctctagatctttcttaatagtttatcttg 12576991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 38684683 - 38684631
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctcttg 214  Q
    ||||| ||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  38684683 catatttctatccaactaattaatctctagatctttcttaaaagtttctcttg 38684631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 7359339 - 7359390
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| || |||||||| ||| |||||||||||||||| |||||||||||||    
T  7359339 catatttcgatccaacttattaatctctagatttttctaaatagtttctctt 7359390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 7678672 - 7678630
Alignment:
Q  171 atccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||| |||||||||| ||||| |||||||||||||    
T  7678672 atccaactcattaatctctagatctttctaaatagtttctctt 7678630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 2713137 - 2713096
Alignment:
Q  172 tccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  2713137 tccaactcattcatctctagatccttcttaatagtttctctt 2713096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 39322146 - 39322191
Alignment:
Q  163 atatctctatccaactcattgatctctagatttttcttaatagttt 208  Q
    |||| ||||||||||||||| |||| ||||| ||||||||||||||    
T  39322146 atatttctatccaactcattaatctttagatctttcttaatagttt 39322191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 12135904 - 12135861
Alignment:
Q  168 tctatccaactcattgatctctagatttttcttaatagtttctc 211  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  12135904 tctatccaactcattaatctctagatttttcttaatagtttctc 12135861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 12231571 - 12231517
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||    
T  12231571 tatcatatctctatccaactcattaatctcgagatctttcttaatagtctctctt 12231517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 15577624 - 15577570
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||||||||||||||| ||||||| ||  ||||||||||||||||||    
T  15577624 tatcatatctctatccaactcattaatctctatatccttcttaatagtttctctt 15577570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 30834057 - 30834107
Alignment:
Q  163 atatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||| ||||||||||||||| |||||||||| |||| ||||||||||||||    
T  30834057 atatttctatccaactcattaatctctagatctttcgtaatagtttctctt 30834107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 37591197 - 37591151
Alignment:
Q  163 atatctctatccaactcattgatctctagat-ttttcttaatagttt 208  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||    
T  37591197 atatctctatccaactcattaatctctagattttttcttaatagttt 37591151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 10584973 - 10585022
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagttt 208  Q
    |||||||||||| ||||||||||| |||||| ||| ||||||||||||||    
T  10584973 tatcatatctctgtccaactcattaatctctggatctttcttaatagttt 10585022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 44008775 - 44008731
Alignment:
Q  169 ctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||    
T  44008775 ctatccaactcattgatctctagatctttctcgatagtttctctt 44008731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 46388591 - 46388528
Alignment:
Q  149 aatgttctattatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||| |||||||| |||||||||||||  ||||||||||  ||||||| ||||||||||    
T  46388591 aatgttctat-atcatatccctatccaactcatcaatctctagatcattcttaaaagtttctctt 46388528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 46395035 - 46394972
Alignment:
Q  149 aatgttctattatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||| |||||||| |||||||||||||  ||||||||||  ||||||| ||||||||||    
T  46395035 aatgttctat-atcatatccctatccaactcatcaatctctagatcattcttaaaagtttctctt 46394972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 3818935 - 3818986
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| ||||| ||||||||| ||||||| || |||||||||||||||||||    
T  3818935 catatttctattcaactcattaatctctaaatctttcttaatagtttctctt 3818986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 16822096 - 16822151
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctcttg 214  Q
    ||||||||| ||||||| |||||| ||||||| || ||||||| ||||||||||||    
T  16822096 tatcatatcgctatccagctcattaatctctacatctttcttactagtttctcttg 16822151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 21251816 - 21251765
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| |||||| ||||||||||||||||||| |||||| || |||||||||    
T  21251816 catatttctatcaaactcattgatctctagatatttctttatggtttctctt 21251765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 39525961 - 39525910
Alignment:
Q  161 tcatatctctatccaactcattgatctctagatttttcttaatagtttctct 212  Q
    ||||||||||||||| |||| ||||||||| || ||||||||| ||||||||    
T  39525961 tcatatctctatccagctcagtgatctctatatatttcttaattgtttctct 39525910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 42501311 - 42501260
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| ||||||||||||||| |||| ||||| |||||||||| ||||||||    
T  42501311 catatttctatccaactcattaatctatagatctttcttaataatttctctt 42501260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 8203210 - 8203264
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||| |||  ||||||||||| |||||||||| ||| |||||||||||||||    
T  8203210 tatcatacctccgtccaactcattaatctctagatcttttttaatagtttctctt 8203264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 8342961 - 8343011
Alignment:
Q  163 atatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||| ||||||||||||||| |||||||||| ||| ||||| |||||||||    
T  8342961 atatttctatccaactcattaatctctagatctttattaattgtttctctt 8343011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 13827659 - 13827707
Alignment:
Q  162 catatctctatccaactcattgatctctaga--tttttcttaatagttt 208  Q
    ||||| ||||||||||||||| |||||||||  ||||||||||||||||    
T  13827659 catatttctatccaactcattaatctctagacttttttcttaatagttt 13827707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 19969301 - 19969342
Alignment:
Q  172 tccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||| |||||||||| ||| |||||||||||||||    
T  19969301 tccaactcattaatctctagatctttgttaatagtttctctt 19969342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 853861 - 853913
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctc 211  Q
    |||||| || |||||||||||| | ||||||||||  ||||||||||||||||    
T  853861 tatcatgtccctatccaactcactaatctctagatccttcttaatagtttctc 853913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 39515956 - 39515996
Alignment:
Q  171 atccaactcattgatctctagatttttcttaatagtttctc 211  Q
    |||||||||||| || ||||| |||||||||||||||||||    
T  39515956 atccaactcattaatttctaggtttttcttaatagtttctc 39515996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 43423922 - 43423870
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctcttg 214  Q
    ||||| ||||||||||||| | |||||||||| ||||||||| || |||||||    
T  43423922 catatttctatccaactcactaatctctagatctttcttaatggtctctcttg 43423870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 29653622 - 29653676
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||| |||||| |||||||| |||||||||| |||||||||||||||||||    
T  29653622 tatcatatttctatctaactcattaatctctagatctttcttaatagtttctctt 29653676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 30144978 - 30144929
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctc 211  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  30144978 catatccctatccaactcattaatctctagatctttcttaatagtttctc 30144929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 24549767 - 24549818
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| || |||||||||||| |||||||||| |||||||||||||||||||    
T  24549767 catatttcaatccaactcattaatctctagatctttcttaatagtttctctt 24549818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 41483693 - 41483639
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||| |||||||||| || || ||||||| |||||||||||||||||||    
T  41483693 tatcatatctatatccaactcgttaatttctagatctttcttaatagtttctctt 41483639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 19262534 - 19262587
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctct 212  Q
    ||||||||| |||||||||||||| ||||||||||  |||| ||||||||||||    
T  19262534 tatcatatccctatccaactcattaatctctagatgcttctaaatagtttctct 19262587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 40139026 - 40139078
Alignment:
Q  161 tcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||| |||||| ||| |||| |||||||||| |||||||||||||||||||    
T  40139026 tcatatttctatcaaacgcattaatctctagatctttcttaatagtttctctt 40139078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 12966219 - 12966168
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| ||||||||| ||||| ||||||| || |||||||||||||||||||    
T  12966219 catatttctatccaaatcattaatctctaaatatttcttaatagtttctctt 12966168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 30664762 - 30664723
Alignment:
Q  171 atccaactcattgatctctagatttttcttaatagtttct 210  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  30664762 atccaactcattaatctctagatctttcttaatagtttct 30664723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 1569210 - 1569168
Alignment:
Q  171 atccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||| |||||||||| ||||||||||||| |||||    
T  1569210 atccaactcattaatctctagatctttcttaatagttactctt 1569168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 9797783 - 9797833
Alignment:
Q  160 atcatatctctatccaactcattgatctctagatttttcttaatagtttct 210  Q
    ||||||||||||||||||||||| |||||||   |||||||||||| ||||    
T  9797783 atcatatctctatccaactcattaatctctatggttttcttaatagcttct 9797833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 28858247 - 28858197
Alignment:
Q  163 atatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||| ||||||||||| ||| |||||||||| |||||||||||||| ||||    
T  28858247 atatttctatccaacttattaatctctagatctttcttaatagtttgtctt 28858197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 30914578 - 30914632
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||| |||||||||||||| ||||||||||  ||| | ||||||||||||    
T  30914578 tatcatatccctatccaactcattaatctctagatccttcatgatagtttctctt 30914632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 45601670 - 45601628
Alignment:
Q  171 atccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||| |||||||||| ||||||||| |||||||||    
T  45601670 atccaactcattaatctctagatctttcttaatggtttctctt 45601628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 9191981 - 9191928
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctct 212  Q
    |||||||| |||||| || | ||| |||||||||| ||||||||||||||||||    
T  9191981 tatcatatttctatcaaatttattaatctctagatctttcttaatagtttctct 9191928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 41461296 - 41461251
Alignment:
Q  168 tctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||||||| ||| |||||| ||| |||||||||||||||    
T  41461296 tctatccaactcattaatcactagatctttattaatagtttctctt 41461251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 41578199 - 41578248
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagttt 208  Q
    |||||||||||||||||||||| | ||||||| || |||||||| |||||    
T  41578199 tatcatatctctatccaactcactaatctctatatgtttcttaacagttt 41578248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 8197617 - 8197671
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||    
T  8197617 tatcatatttctatccaactcattaatctttagatctttcttaatagtttctctt 8197671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 8202377 - 8202431
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||    
T  8202377 tatcatatttctatccaactcattaatctttagatctttcttaatagtttctctt 8202431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 12026080 - 12026133
Alignment:
Q  158 ttatcatatctctatccaactcattgatctctagatttttcttaatagtttctc 211  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||    
T  12026080 ttatcatatttctatcaaactcattaatctctagatctttcttaatagtttctc 12026133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 2906080 - 2906120
Alignment:
Q  170 tatccaactcattgatctctagatttttcttaatagtttct 210  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  2906080 tatccaactcattgatctctacatttttcttaatagtttct 2906120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 1626401 - 1626347
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||| | ||| ||||||||| |||||||||| |||||||||||||||||||    
T  1626401 tatcatatttttatacaactcattaatctctagatctttcttaatagtttctctt 1626347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 18188958 - 18188904
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||| |||||||| |||||| |||||||||| ||||| |||||||||||||    
T  18188958 tatcatatttctatccagctcattaatctctagatctttctgaatagtttctctt 18188904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 41779186 - 41779240
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||||| ||||||||| |||||||||| ||| |||||| ||||||||    
T  41779186 tatcatatctctattcaactcattaatctctagatcttttttaataatttctctt 41779240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 23915782 - 23915823
Alignment:
Q  172 tccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  23915782 tccacctcattaatctctagatttttcttaatagtttctctt 23915823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 43832303 - 43832250
Alignment:
Q  160 atcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||  ||||||||||||| ||||||||||  ||||||||||||||||||    
T  43832303 atcatatccttatccaactcattaatctctagatccttcttaatagtttctctt 43832250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 31254493 - 31254445
Alignment:
Q  160 atcatatctctatccaactcattgatctctagatttttcttaatagttt 208  Q
    ||||||| ||||| ||||||||| |||||||||| ||||||||||||||    
T  31254493 atcatatttctattcaactcattaatctctagatctttcttaatagttt 31254445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 15836146 - 15836091
Alignment:
Q  159 tatcatatctctatccaactcattgatctctaga-tttttcttaatagtttctctt 213  Q
    ||||||||||||||||||||| || ||||||| | ||||||||| |||||||||||    
T  15836146 tatcatatctctatccaactcgttaatctctacattttttcttagtagtttctctt 15836091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 19024373 - 19024330
Alignment:
Q  170 tatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||    
T  19024373 tatccaactcattaatctttagatctttcttaatagtttctctt 19024330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 19235063 - 19235114
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| ||||||||| ||||| |||||||||| ||||| |||||||||||||    
T  19235063 catatttctatccaaatcattaatctctagatctttctcaatagtttctctt 19235114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 26784419 - 26784470
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| ||||| ||||||||| ||||||| || |||||||||||||||||||    
T  26784419 catatttctattcaactcattaatctctatatctttcttaatagtttctctt 26784470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 38435146 - 38435103
Alignment:
Q  171 atccaactcattgatctctagatttttcttaatagtttctcttg 214  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||    
T  38435146 atccaacacattaatctctagatctttcttaatagtttctcttg 38435103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 42149739 - 42149790
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| |||||||| |||| | |||||||||| |||||||||||||||||||    
T  42149739 catatttctatccagctcaataatctctagatctttcttaatagtttctctt 42149790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 33625287 - 33625325
Alignment:
Q  172 tccaactcattgatctctagatttttcttaatagtttct 210  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  33625287 tccaactcattaatctctagatatttcttaatagtttct 33625325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 37481704 - 37481746
Alignment:
Q  170 tatccaactcattgatctctagatttttcttaatagtttctct 212  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||    
T  37481704 tatccaactcatttatcgctagatctttcttaatagtttctct 37481746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 212
Target Start/End: Original strand, 6230365 - 6230393
Alignment:
Q  184 atctctagatttttcttaatagtttctct 212  Q
    |||||||||||||||||||||||||||||    
T  6230365 atctctagatttttcttaatagtttctct 6230393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 45640615 - 45640655
Alignment:
Q  173 ccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||| ||| |||||||||| |||||||||||||||||||    
T  45640615 ccaacttattaatctctagatctttcttaatagtttctctt 45640655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 11733950 - 11733898
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctcttg 214  Q
    ||||| |||||| |||||||| ||||||||||||||||| |||||||||||||    
T  11733950 catatttctatctaactcattaatctctagatttttctttatagtttctcttg 11733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 39760510 - 39760558
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtt 207  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  39760510 tatcatatctctatccaacttattaatctctagagttttcttaatagtt 39760558  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 79230 - 79179
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| |||||||| |||||| |||||||||| |||||||||||||||||||    
T  79230 catatttctatccagctcattaatctctagatctttcttaatagtttctctt 79179  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 16705950 - 16705899
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| || |||||||||||| |||||||| |||||||||||||||||||||    
T  16705950 catatttcgatccaactcattaatctctagctttttcttaatagtttctctt 16705899  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 10079983 - 10080037
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||    
T  10079983 tatcatatttctatccaactcattaatctctagatctttcttaacagtttttctt 10080037  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 24739924 - 24739978
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||||||||||| ||| ||||||| || ||||| |||||||||||||    
T  24739924 tatcatatctctatccaactgattaatctctacatctttctcaatagtttctctt 24739978  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 38178336 - 38178390
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||||||||||||||| || ||||| | ||| |||||||||||||||    
T  38178336 tatcatatctctatccaactcattaatgtctaggtctttgttaatagtttctctt 38178390  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 39967579 - 39967629
Alignment:
Q  163 atatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||| |||||||||||| ||| |||||| |||||||||||||||||||    
T  39967579 atatctcaatccaactcattaatcgctagatctttcttaatagtttctctt 39967629  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 39388980 - 39388935
Alignment:
Q  168 tctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||||||| |||||||||| |||| ||||||||||||||    
T  39388980 tctatccaactcattaatctctagatctttcctaatagtttctctt 39388935  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 4011283 - 4011235
Alignment:
Q  165 atctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||| ||||||||||||| |||| ||||| |||||||||||||||||||    
T  4011283 atctttatccaactcattaatctttagatctttcttaatagtttctctt 4011235  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 9969204 - 9969259
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctcttg 214  Q
    ||||||||| ||||| ||||||||||||||||||| ||| | |||||| |||||||    
T  9969204 tatcatatccctatcaaactcattgatctctagatctttttcaatagtatctcttg 9969259  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 10109016 - 10108965
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||| ||||| || |||||||||| ||||||| |||||||||||    
T  10109016 catatctctatcaaactcgttaatctctagatctttcttattagtttctctt 10108965  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 35643685 - 35643736
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| || |||||||||||| |||||||||| |||||||||| ||||||||    
T  35643685 catatttcgatccaactcattaatctctagatctttcttaataatttctctt 35643736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 44175318 - 44175263
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttctt-aatagtttctctt 213  Q
    ||||||||||||| |||||||||  |||||||||| |||||| |||||||||||||    
T  44175318 tatcatatctctacccaactcatcaatctctagatctttcttaaatagtttctctt 44175263  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 3645292 - 3645238
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||| |||| ||||||| |||||||| | |||||||| ||||||||||    
T  3645292 tatcatatctccatcctactcattaatctctaggtctttcttaacagtttctctt 3645238  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 30783130 - 30783172
Alignment:
Q  171 atccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||| |||||||||| ||||| |||||||||||||    
T  30783130 atccaactcattaatctctagatctttctaaatagtttctctt 30783172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 23023421 - 23023377
Alignment:
Q  169 ctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||||||| |||| ||||| ||||||| |||||||||||    
T  23023421 ctatccaactcattaatctgtagatctttcttagtagtttctctt 23023377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 38483048 - 38483092
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagt 206  Q
    ||||| ||||||||||||||| |||||||||| ||||| ||||||    
T  38483048 catatttctatccaactcattaatctctagatctttctgaatagt 38483092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 33997623 - 33997674
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| ||||||||||||||| ||||||||  ||||||||||||||||||||    
T  33997623 catatttctatccaactcattaatctctaggcttttcttaatagtttctctt 33997674  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 1681597 - 1681651
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||| ||| |||||||||| ||||||||||  ||||||||||||||||||    
T  1681597 tatcatatccctacccaactcattaatctctagatccttcttaatagtttctctt 1681651  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 1748025 - 1748074
Alignment:
Q  163 atatctctatccaactcattgatctctagatttttcttaatagtttctct 212  Q
    |||| ||||||||||||||| ||||||| |||||||||| ||||||||||    
T  1748025 atatttctatccaactcattaatctctaaatttttcttagtagtttctct 1748074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 24666014 - 24665962
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctcttg 214  Q
    ||||| || |||||||||||||| ||||| || ||||||||||||||||||||    
T  24666014 catatttcgatccaactcattgacctctaaatatttcttaatagtttctcttg 24665962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 1747717 - 1747771
Alignment:
Q  159 tatcatatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    |||||||||| ||||||||||||| ||||||||||  ||||||  ||||||||||    
T  1747717 tatcatatctttatccaactcattaatctctagatccttcttaccagtttctctt 1747771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 31831947 - 31831988
Alignment:
Q  171 atccaactcattgatctctagatttttcttaatagtttctct 212  Q
    |||||||||| | |||||||||| ||||||||||||||||||    
T  31831947 atccaactcagtaatctctagatctttcttaatagtttctct 31831988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 35199701 - 35199749
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttct 210  Q
    ||||| |||||| |||||||| |||||||||| |||| |||||||||||    
T  35199701 catatttctatctaactcattaatctctagatctttcctaatagtttct 35199749  T

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Target: scaffold0373 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 2380 - 2431
Alignment:
Q  162 catatctctatccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||| |||||| |||||||| |||||||||| |||||||||||| ||||||    
T  2380 catatttctatcaaactcattaatctctagatctttcttaatagtctctctt 2431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 178509 - 178550
Alignment:
Q  172 tccaactcattgatctctagatttttcttaatagtttctctt 213  Q
    ||||||||||| ||||||| || |||||||||||||||||||    
T  178509 tccaactcattaatctctatatctttcttaatagtttctctt 178550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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