View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_37 (Length: 226)
Name: NF17961_low_37
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 32062628 - 32062428
Alignment:
| Q |
11 |
catcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttcaatgaccttttctttctaacaaa |
110 |
Q |
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| T |
32062628 |
catcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccggtgcattctcttgcttcagtgaccttttctttctaacaaa |
32062529 |
T |
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| Q |
111 |
gtctattggcttcccaaacatgttgtttatgtcatccattgcttccttcatgttgattgtggggtctactaaaccgtggtgacaagcattttccaccttt |
210 |
Q |
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| T |
32062528 |
gtctattggcttcccaaacatgttgtttatgtcatccattgcttccttcatgttgattgtggggtctactaaaccgtggtgacaagcattttccaccttt |
32062429 |
T |
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| Q |
211 |
g |
211 |
Q |
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| T |
32062428 |
g |
32062428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 32062758 - 32062652
Alignment:
| Q |
16 |
tcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttcaatgaccttttctttctaacaaagtcta |
115 |
Q |
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|||||||| ||||| || |||||||||| || |||||||||||| |||||| || |||| ||||| ||||||| | | ||||| || | |||||| |||| |
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| T |
32062758 |
tcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttttccgaacaaaatcta |
32062659 |
T |
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| Q |
116 |
ttggctt |
122 |
Q |
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| T |
32062658 |
ttggctt |
32062652 |
T |
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