View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_4 (Length: 498)
Name: NF17961_low_4
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_4 |
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| [»] scaffold0244 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 148 - 481
Target Start/End: Complemental strand, 37665620 - 37665283
Alignment:
| Q |
148 |
catgtaaattctctaaaattcgtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagtta |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37665620 |
catgtaaattctctaaaattcgtagcattaccattgttcatgacattaaggataaactcatttggagtacttcttcaaatgattaatactcaactagtta |
37665521 |
T |
|
| Q |
248 |
aggatatag----gtggttagatcgaatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatcta |
343 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37665520 |
aggatatagctaggtggttagatcgaatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatcta |
37665421 |
T |
|
| Q |
344 |
agaaatttttgtttgtcggcgatgcatgctagcctccctaccaatgtctttcacggttcaagacatcttacctcttatacttgtcatagatgtggtggac |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
37665420 |
agaaatttttgtttgtcggcgatgcatgctagcctccctaccaatgtctttcgcggttcaggacatcttacctcttatacttgtcatagatgttgtggat |
37665321 |
T |
|
| Q |
444 |
ctacataaagtgatatgcatactcctcgtgattgtcct |
481 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
37665320 |
ctacataaagtgatatgcatgctcctcgtgattgtcct |
37665283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 169 - 481
Target Start/End: Original strand, 13451421 - 13451734
Alignment:
| Q |
169 |
gtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatc- |
267 |
Q |
| |
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||||||||||||||| |||||||| | ||||| ||| ||||||| | ||| | |||||| | | | |||| |||||| |||||||||| |||| ||| |
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| T |
13451421 |
gtagcattaccattgatcatgacaatgaggatagacttatttggattgcttatccaaatggtcagttctcaggtagttatggatataggtagttaaatca |
13451520 |
T |
|
| Q |
268 |
gaatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggcgatg |
367 |
Q |
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||||||||| | ||||| |||| || |||||||||||||| | || | ||||||| || ||||| ||||||||||| ||||| | | | | |||| |
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| T |
13451521 |
gaatctaac---ttaacaattagaacctgttatttgttggagttggattcagaggctatcggtttctaaaaatctaagacattttagctggcttgggatg |
13451617 |
T |
|
| Q |
368 |
catgctagcctccctaccaatgtctttcacggttcaagacatcttacctcttata---cttgtcatagatgtggtggacctacataaagtgatatgcata |
464 |
Q |
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|||||||| |||||||| |||| ||| ||||||||||||||||||||| || ||||||||| |||||||| | | |||||| |||||||| |
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| T |
13451618 |
catgctagtctccctacgaatgccttctttggttcaagacatcttacctctggtacttcttgtcataaatgtggtgcatatgttgaaagtggtatgcata |
13451717 |
T |
|
| Q |
465 |
ctcctcgtgattgtcct |
481 |
Q |
| |
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||| ||||||||||||| |
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| T |
13451718 |
ctcttcgtgattgtcct |
13451734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 37665754 - 37665681
Alignment:
| Q |
12 |
atgaaaaaatggagaaatctttttatatattttnnnnnnnnnnttaagagtgataaatgaatatgttaatgacaag |
87 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
37665754 |
atgaaaaaatggagaaatctttttatatattttaaaaaaaaaattaagagtgataaatga--atgttaatgacaag |
37665681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 165 - 481
Target Start/End: Complemental strand, 1260280 - 1259963
Alignment:
| Q |
165 |
attcgtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttag |
264 |
Q |
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||||||||||||||||||| |||||||| | ||| |||||||||| ||| ||||| |||||| | |||||||| ||||||| |||||||||||||| | |
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| T |
1260280 |
attcgtagcattaccattgatcatgacaccgaagataaactcatttgaagtgcttctccaaatggtcaatactcagctagttatggatataggtggtttg |
1260181 |
T |
|
| Q |
265 |
atcg-aatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggc |
363 |
Q |
| |
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||| |||||||| ||||||| |||||| ||||| ||||||||| | || |||||||| | ||||||||||||||||| ||||||||| | || |
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| T |
1260180 |
atcataatctaac---tcaacaagtagagctagttaattgttggagttggatctggaggcttcaagtttctgaaaatctaagacatttttgttggctggt |
1260084 |
T |
|
| Q |
364 |
gatgcatgctagcctccctaccaatgtctttcacggttcaagacatcttacctcttata---cttgtcatagatgtggtggacctacataaagtgatatg |
460 |
Q |
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|||||||||||||||||||| ||||| ||||| |||||| |||||||||||||| ||| ||||||| |||||||||| | | |||||||||| |
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| T |
1260083 |
gatgcatgctagcctccctatcaatgcctttcgtggttcacgacatcttacctctgatacatcttgtcaaagatgtggtgcatttgttgaaagtgatata |
1259984 |
T |
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| Q |
461 |
catactcctcgtgattgtcct |
481 |
Q |
| |
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||||||| |||||| |||||| |
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| T |
1259983 |
catactcttcgtgactgtcct |
1259963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 33509096 - 33509243
Alignment:
| Q |
278 |
actcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggcgatgcatgctagcc |
377 |
Q |
| |
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||||||||| |||||||||||| ||||||||| | || | |||||| | | ||| ||||||||| ||| ||||||||| | || |||||||||||||| |
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| T |
33509096 |
actcaacaagtagagccagttaattgttggagttggatctagaggcttctggtttatgaaaatcttagacatttttgttggctggtgatgcatgctagcc |
33509195 |
T |
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| Q |
378 |
tccctaccaatgtctttcacggttcaagacatcttacctcttatactt |
425 |
Q |
| |
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|||||||||||| ||||| |||||| |||||||||||||| |||||| |
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| T |
33509196 |
tccctaccaatgcctttcgtggttcacgacatcttacctctgatactt |
33509243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 295 - 440
Target Start/End: Complemental strand, 8905 - 8757
Alignment:
| Q |
295 |
agttatttgttggaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggcgatgcatgctagcctccctaccaatgtcttt |
394 |
Q |
| |
|
||||| ||||||||| | || ||||||||| || ||||||||||||||||| ||||||||| || || |||||||| | ||||||||||||||| |||| |
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|
| T |
8905 |
agttaattgttggagttggatttggaggcttccagtttctgaaaatctaagacatttttgttggttggtgatgcatgatggcctccctaccaatgccttt |
8806 |
T |
|
| Q |
395 |
cacggttcaagacatcttacctcttatac---ttgtcatagatgtggtg |
440 |
Q |
| |
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| |||||| |||||||||||||| |||| |||||| |||||||||| |
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| T |
8805 |
cgtggttcacgacatcttacctctgatacattttgtcaaagatgtggtg |
8757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 14960 - 14852
Alignment:
| Q |
169 |
gtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatc- |
267 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||| | |||||||| ||||||| |||||||||||||| |||| |
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| T |
14960 |
gtagcattaccattgatcatgacaccgaggataaactcatttggagtgcttctccaaatggtcaatactcatctagttatggatataggtggtttgatca |
14861 |
T |
|
| Q |
268 |
gaatctaac |
276 |
Q |
| |
|
||||||||| |
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|
| T |
14860 |
gaatctaac |
14852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 212 - 418
Target Start/End: Complemental strand, 40699367 - 40699163
Alignment:
| Q |
212 |
gagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatc-gaatctaacgactcaacaaatagagccagttatttgttggagg |
310 |
Q |
| |
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|||| ||||| |||||| | |||| ||| ||||||| | ||||||||||||||||| ||||||||| ||||||| |||||| | ||| ||||||||| |
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| T |
40699367 |
gagtgcttctccaaatggtcaatattcagctagttatgaatataggtggttagatcagaatctaac---tcaacaagtagagctaattaattgttggagt |
40699271 |
T |
|
| Q |
311 |
tagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggcgatgcatgctagcctccctaccaatgtctttcacggttcaagacatc |
410 |
Q |
| |
|
| ||| |||||||| | |||||||||||||| | ||||||||| | | |||||||| ||||||||||||||||| |||| |||||| |||||| |
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| T |
40699270 |
tggacctggaggcttcaagtttctgaaaatctatggcatttttgttggatgaagatgcatgatagcctccctaccaatgcctttggtggttcacgacatc |
40699171 |
T |
|
| Q |
411 |
ttacctct |
418 |
Q |
| |
|
|||||||| |
|
|
| T |
40699170 |
ttacctct |
40699163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 53910603 - 53910688
Alignment:
| Q |
185 |
tcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatcgaa |
270 |
Q |
| |
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|||||||||| ||||| ||||||||||||| |||||| | ||| |||||||||||||||| |||||| |||||||||||||| |
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| T |
53910603 |
tcatgacattgaggatagactcatttggagtgcttctttagatggccaatactcaactagttattgatatatgtggttagatcgaa |
53910688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 44922511 - 44922591
Alignment:
| Q |
404 |
agacatcttacctcttata---cttgtcatagatgtggtggacctacataaagtgatatgcatactcctcgtgattgtcct |
481 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||| | || |||||||||||||||||| ||||||||||||| |
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|
| T |
44922511 |
agacatcttacctctaatatttcttgtcatagatgtggtgaatctgttgaaagtgatatgcatactcttcgtgattgtcct |
44922591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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