View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_5 (Length: 461)
Name: NF17961_low_5
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_5 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 227 - 451
Target Start/End: Original strand, 16384289 - 16384513
Alignment:
| Q |
227 |
atttaactaaattattctacataatttatatagatatagtcattattcattaagtcatgtgggtacctcaatccgagaaagtctatcagtcaccatacaa |
326 |
Q |
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| T |
16384289 |
atttaactaaattattccacataatttatatagatatagtcattattcgttaagtcatgtgggtacctcaatccgagaaagtctatcagtcaccatacaa |
16384388 |
T |
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| Q |
327 |
agattctttgggttgcttccaaatttcatgatatttttctgcattttctcgtatttagcctgtcaaattgtaaaatcaccatgtgaatactaaaagcatc |
426 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16384389 |
agattctttgagttgcttccaaatttctggatatttttctgcattttctcgtatttagcctgtcaaattgtaaaatcaccatgtgaacactaaaagcatc |
16384488 |
T |
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| Q |
427 |
aagagtaatgttatttgaacctatg |
451 |
Q |
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| T |
16384489 |
aagagtaatgttatttgaacctatg |
16384513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 16383231 - 16383440
Alignment:
| Q |
17 |
agtatatgcatatcatatgcattgagaaaattatgaggattgtttagagatcaaattaaatgagtacacaccaatgtattgagagctcctcctttgtatc |
116 |
Q |
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| T |
16383231 |
agtatatgcatataatatgtattgagaaaattatgagcattgtttagagattaaattaaatgagtacacaccaatgtattgagagctcctcctttgtatc |
16383330 |
T |
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| Q |
117 |
tatgaggaacatgtggtcttttttcacgagacacataaacaactagtggcatttccttttggtcattaatgatcttcnnnnnnngataataaggaaaatc |
216 |
Q |
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| T |
16383331 |
tatgaggaacatgtggtcttttttcacgagacacataaacaactagtggcatttccttttggtcattaatgatcttcaaaaaaagataataaggaaaatc |
16383430 |
T |
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| Q |
217 |
accaatatgt |
226 |
Q |
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| T |
16383431 |
atcaatatgt |
16383440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 17582707 - 17582836
Alignment:
| Q |
64 |
agatcaaattaaatgagtacacaccaatgtattgagagctcctcctttgtatctatgaggaacatgtggtcttttttcacgagacacataaacaactagt |
163 |
Q |
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| T |
17582707 |
agatcaaattaaatgagtacacaccaatgtattaagtgctcctcctttgtatctatgaggaacatctggtcttctttcacgagacacataaacaaccagt |
17582806 |
T |
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| Q |
164 |
ggcatttccttttggtcattaatgatcttc |
193 |
Q |
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| T |
17582807 |
ggcatttccttttcgtcattaataatcttc |
17582836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 271480 - 271402
Alignment:
| Q |
81 |
tacacaccaatgtattgagagctcctcctttgtatctatgaggaacatgtggtcttttttcacgagacacataaacaac |
159 |
Q |
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| T |
271480 |
tacacaccaatgtattgagggcacctcctttgaatttgtgaggaagtgatggccttctttcacgagacacataaacaac |
271402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 271002 - 270961
Alignment:
| Q |
290 |
tacctcaatccgagaaagtctatcagtcaccatacaaagatt |
331 |
Q |
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| T |
271002 |
tacctcaatccgagaaggtctgtcagtcaccatacgaagatt |
270961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 287 - 446
Target Start/End: Complemental strand, 14954 - 14795
Alignment:
| Q |
287 |
gggtacctcaatccgagaaagtctatcagtcaccatacaaagattctttgggttgcttccaaatttcatgatatttttctgcattttctcgtatttagcc |
386 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||| ||| |
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| T |
14954 |
gggtacctcgatccgagaaggtctatcagtcaccatacaaagattctttaggttgcttccgaatttgtcaatatttttttgcattttctcgtatttggcc |
14855 |
T |
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| Q |
387 |
tgtcaaattgtaaaatcaccatgtgaatactaaaagcatcaagagtaatgttatttgaac |
446 |
Q |
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| T |
14854 |
tgtcaaattgtaaaatcatcatgtgaacgctaaaaacattaagagtaatgttatttgaac |
14795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 15295 - 15181
Alignment:
| Q |
79 |
agtacacaccaatgtattgagagctcctcctttgtatctatgaggaacatgtggtcttttttcacgagacacataaacaactagtggcatttccttttgg |
178 |
Q |
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|||||| ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15295 |
agtacataccaatgtattgagagctcctcctttgaatctgtgaggaacatttggtcttttttcacgagacacataaacaactagtggcatttctttttgg |
15196 |
T |
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| Q |
179 |
tcattaatgatcttc |
193 |
Q |
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||||||||||||||| |
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| T |
15195 |
tcattaatgatcttc |
15181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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