View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_6 (Length: 449)
Name: NF17961_low_6
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 23056422 - 23055990
Alignment:
| Q |
1 |
gaatttgcaaatttatgaacataagagataagataactgaccctatgcctcgggttcccccagtcacaagagctgtcttcccttggagtgaccatctttg |
100 |
Q |
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| T |
23056422 |
gaatttgcaaatttatgaacataagagataagataactgaccctatgcctcgggttcccccagtcacaagagctgtcttcccttggagtgaccatctttg |
23056323 |
T |
|
| Q |
101 |
atctttgaatttcaactttgtttcatccatatttcttgcttctataatcagtgagaaaaggaaaatcaaattacgatttaatagctctcaaaatgcaaga |
200 |
Q |
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| T |
23056322 |
atctttgaatttcaactttgtttcatccatatttcttgcttctataatcagtgaggaaaggaaaagcaaattacgatttaatagctctcaaaatgcaaga |
23056223 |
T |
|
| Q |
201 |
acatataaatacaaatactcatatataaatggataaatccttatataagatacaaacttaacccgtgtttggtggcaaggttgatgaaataatacaatat |
300 |
Q |
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| T |
23056222 |
acatataaatacaaatactcatatataaatggataaatccttatataagatacaaacttaacccgtgtttggtggcaaggttgatgaaataatacaattt |
23056123 |
T |
|
| Q |
301 |
ttttatacgagagactaacaaatattttcttcataaat-------aaataaaatgtgtacaattatattaagtattagagtttttctttttagaggatta |
393 |
Q |
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| T |
23056122 |
ttttatacgagagactaacaaatattttcttcataaataaaaagaaaaaaaaaagtgtacaattatattaagtattagagtttttctttttagagtatta |
23056023 |
T |
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| Q |
394 |
aaagaaagtattagagatattgataaacgaatg |
426 |
Q |
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| T |
23056022 |
aaagaaagtattatagatattgataaacgaatg |
23055990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 23080267 - 23080193
Alignment:
| Q |
35 |
aactgaccctatgcctcgggttcccccagtcacaagagctgtcttcccttggagtgaccatctttgatctttgaa |
109 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||| |
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| T |
23080267 |
aactgaccctatgcctcgtgttccaccagtcactagagctgtcattccttggagtgaccatctttgatctttgaa |
23080193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 23063624 - 23063525
Alignment:
| Q |
35 |
aactgaccctatgcctcgggttcccccagtcacaagagctgtcttcccttggagtgaccatctttgatctttgaatttcaactttgtttcatccatattt |
134 |
Q |
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|||||||||||||||||| ||||| ||||| || ||||||||| | || || ||||||||| |||| |||||||| ||||||||||| ||| |||||||| |
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| T |
23063624 |
aactgaccctatgcctcgtgttccaccagttactagagctgtcattccatgaagtgaccatttttggtctttgaaattcaactttgtgtcaaccatattt |
23063525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 23091174 - 23091100
Alignment:
| Q |
35 |
aactgaccctatgcctcgggttcccccagtcacaagagctgtcttcccttggagtgaccatctttgatctttgaa |
109 |
Q |
| |
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|||| |||||| |||||| ||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||| |
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| T |
23091174 |
aactaaccctaagcctcgtgttccaccagtcactagagctgtcattccttggagtgaccatctttgatctttgaa |
23091100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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