View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_8 (Length: 427)
Name: NF17961_low_8
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 21288753 - 21288350
Alignment:
| Q |
1 |
aaatcgatatgaataatgttgtacatccatg-aagnnnnnnnntgaatcatgcaccaagttggtctggtcgtatcacgcactaacgtacaaaattgcaat |
99 |
Q |
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| T |
21288753 |
aaatcgatatgaataatgttgtacatccatggaaaaaaaaaaatgaatcatgcaccaagttggtc-----gtatcacgcactaacgtacaaaattgcaat |
21288659 |
T |
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| Q |
100 |
ttggctctttgatatctttctttaaagaatatttgatcgtattcgaaggccttcgaatgcctgtcagttgtataagacacatgttatattgttgtactca |
199 |
Q |
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| T |
21288658 |
ttgactctttgatatctttctttaaagaatatttgatcgtattcgaa----------tgtccgtcagttgtataagacacgtgttatattgttgtactca |
21288569 |
T |
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| Q |
200 |
t-------gcacaaaagatatatcaaatagttgtcttttgagatagaaatctcatgatttttatcaaaatcaagttcaattcttttgtgatcatacattt |
292 |
Q |
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| T |
21288568 |
tcttcaatgcacaaaagagatatcgaatagttgtcttttgagatagaaatctcatgatttttatcaaaatcaagttcaattcttttgtgaccatacattt |
21288469 |
T |
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| Q |
293 |
ttgtcattttatg--agatatattagcatatataaacaatcatttccacttagttttcatatgtgttgaagtattgaacaatatttgttgataataattg |
390 |
Q |
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| T |
21288468 |
ttgtcattttatgatatatatattagcatatataaacaatcatttccacttagttttcatatgtgttgaagtgttgaacaatatatgtggataataattg |
21288369 |
T |
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| Q |
391 |
ttactccaattatttaatc |
409 |
Q |
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| T |
21288368 |
ttaccccaattatttaatc |
21288350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 21284670 - 21284586
Alignment:
| Q |
238 |
gaaatctcatgatttttatcaaaatcaagttcaattcttttgtgatcatacatttttgtcattttatgagatatattagcatata |
322 |
Q |
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||||| ||| |||||| ||| ||| |||||||||||||||||||| |||| ||||||| |||||||||||| |||||| |||||| |
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| T |
21284670 |
gaaatttcacgattttgatctaaaccaagttcaattcttttgtgaacataaatttttgacattttatgagacatattaacatata |
21284586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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