View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17961_low_9 (Length: 425)
Name: NF17961_low_9
Description: NF17961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17961_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 115 - 412
Target Start/End: Original strand, 43069343 - 43069636
Alignment:
| Q |
115 |
cataaaattcatttatgtgaatcttaaaattctatgaagtccttagaaaccttaaaaaaattgtgagtcttttnnnnnnnnnnnnnggtatgttaactag |
214 |
Q |
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| T |
43069343 |
cataaaattcatttatgtgaatcttaaaattctatgaagtccttagaaaccctaaaaaaattgtaagtcttttaaaaaaaa------gtatgttaactag |
43069436 |
T |
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| Q |
215 |
tgtcacttatttagaaaacaaaaaatgattaaattttgtattgaaaataacatttcttacaattttaaaagg-ttga-catacaaattcaaaatgatttt |
312 |
Q |
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| T |
43069437 |
tgtcacttattaaggaaacaaaaaatgattaaattttgtattgaaaataacatttcttacacttttaaaaggtttgaccatacaaattcaaaataatttt |
43069536 |
T |
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| Q |
313 |
atgaaatctggtttcttaaccagtgcctctgatacttgttcttnnnnnnntcttttaaaatctcaatcgaatacaccatcatacactccttagacctatg |
412 |
Q |
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| T |
43069537 |
atgaaatctggttccttaaccagtgcctctggtatttgttcttaaaaaaatcttttaaaatctcaatcgaatacaccatcctactctccttaaacctatg |
43069636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43069228 - 43069287
Alignment:
| Q |
1 |
cacttttttcattaattttttagacactaatcactttgttattcacggatttacaatttg |
60 |
Q |
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| T |
43069228 |
cactttttttattaattttttagaaaataatcactttgttattaaaggatttaaaatttg |
43069287 |
T |
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