View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17962_high_14 (Length: 418)
Name: NF17962_high_14
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 403
Target Start/End: Original strand, 44145830 - 44146219
Alignment:
| Q |
13 |
aatatttcttacacactttagtgaaattgcaacatttttatccttgtacaaaatgaagaaactcttcattcattcaaaagaataaccaaagcttgaatta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44145830 |
aatatttcttacacactttagtgaaattgcaacatttttatccttgtacaaaatgaagaaactcttcattcattcaaaagaataaccaaagcttgaatta |
44145929 |
T |
|
| Q |
113 |
aagggttaccacttacaaagaaccttttgtgttctttaggatgataggtgaaagtatattaattttggttgccttatgctcaaattataagaaacaagag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44145930 |
aagggttaccacttacaaagaaccttttgtgttctttaggatgataggtgaaagtatattaattttggttgccttatgctcaaattataagaaacaagag |
44146029 |
T |
|
| Q |
213 |
cttaggttaaaggattaccgcttatnnnnnnnnntgattgaaagtttaccaacgtctttttcttctgactcaagggttaccggtttcttgaatatcaggg |
312 |
Q |
| |
|
| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44146030 |
cataggttaaaggatcaccgcttat-aaaaaaaatgattgaaagtttaccaacgtctttttcttctgactcaagggttaccggtttcttgaatatcaggg |
44146128 |
T |
|
| Q |
313 |
gtcactcaggagtaactcatgacaaaaagcatagacnnnnnnnngttacacttacacataatgcagtcaactttttataaaccatataaat |
403 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44146129 |
gtcactcaagagtaactcatgacaaaaagcatagacttttttttgttacacttacacataatgtagtcaactttttataaaccatataaat |
44146219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 44108952 - 44108999
Alignment:
| Q |
36 |
aaattgcaacatttttatccttgtacaaaatgaagaaactcttcattc |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44108952 |
aaattgcaacatttttatccttgtacaaaattaagaaactcttcattc |
44108999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University