View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_high_15 (Length: 408)
Name: NF17962_high_15
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 2782279 - 2782520
Alignment:
| Q |
8 |
tgagatgaagaagaaatgtgagttgtgcaaaagtccagcaaagttgttctgtgaatcagatcaggcaagcctttgttgggaatgtgatgctaaggttcac |
107 |
Q |
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| T |
2782279 |
tgagatgaagaagaaatgtgagttgtgcaaaagtccagcaaagttgttctgtgaatcagatcaagcaagcctttgttgggaatgtgatgctaaggttcac |
2782378 |
T |
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| Q |
108 |
actgcaaacttcatagtcacaaagcatcacaggtttcttctctgccatatttgtcaatctttaacaccttggcatggcactggacccaagtttgtaccca |
207 |
Q |
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| T |
2782379 |
actgcaaacttcatagtcacaaagcatcacaggtttcttctctgccatatttgtcaatctttaacaccttggcatggcactggacccaagtttgtaccca |
2782478 |
T |
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| Q |
208 |
ctatctccctttgtaaccactgtgttgctgttaccaacaaca |
249 |
Q |
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| T |
2782479 |
ctatctccctttgtaaccactgtgttgctgttaccaacaaca |
2782520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 2782576 - 2782657
Alignment:
| Q |
308 |
agaaaatcaagtggttccatggaaatctacaactccaccaccagtttcttcttgttcttcaaatagtgcaaactaatgctac |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2782576 |
agaaaatcaagtggttccatggaaatctacaactccaccaccagtttcttcttgttcttcaaatagtgcaaactaatgctac |
2782657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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