View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17962_high_29 (Length: 283)
Name: NF17962_high_29
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_high_29 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 18153238 - 18152983
Alignment:
| Q |
12 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153238 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
18153139 |
T |
|
| Q |
112 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153138 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
18153039 |
T |
|
| Q |
212 |
atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaagg |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153038 |
atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaagg |
18152983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 1785691 - 1785753
Alignment:
| Q |
205 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaagg |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1785691 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaagg |
1785753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 222478 - 222716
Alignment:
| Q |
20 |
gaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaa |
119 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||| ||| ||| |
|
|
| T |
222478 |
gaggcttcaagaaaacttgtgttttcagaattatatgaagccagtaaagaaacaaaaaatccatgggtatttgaacccgagtacccgggaaaaagcagaa |
222577 |
T |
|
| Q |
120 |
tatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaaatacatgg |
219 |
Q |
| |
|
||||||||||||||||||| | | ||||| || |||||| ||||||| ||| | ||||| || ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
222578 |
tatttgatggaagaacaggcgacccctttgagcaacctgttctaatagggaagtcctatatcttaaaattaattcatcaagttgatgagaaaattcatgg |
222677 |
T |
|
| Q |
220 |
acgttccagtggacattatgcacttgttacacaacaacc |
258 |
Q |
| |
|
||||| | ||| | || ||||||||||||||||||| |
|
|
| T |
222678 |
gcgttctactgggccctactcacttgttacacaacaacc |
222716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 23937344 - 23937268
Alignment:
| Q |
191 |
attcatcaagttgatgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaagg |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23937344 |
attcatcaagttgatgataaaatacatggacgtttcagtggacattatgcacttgttacacaacaaccccttaaagg |
23937268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 162
Target Start/End: Original strand, 47586031 - 47586066
Alignment:
| Q |
127 |
tggaagaacagggaatctttttgaacagcctgttat |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
47586031 |
tggaagaacagggaatctttttgaacagcctgttat |
47586066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 22998273 - 22998200
Alignment:
| Q |
59 |
gccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatatttgatggaag |
132 |
Q |
| |
|
|||| |||| ||||||| |||||||| |||||| | || ||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
22998273 |
gccaataaagaaacatccaatccatgaatatttcagcctaagtatccgggaaaaagcgaaatattttatggaag |
22998200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University