View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_high_31 (Length: 279)
Name: NF17962_high_31
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 42121594 - 42121719
Alignment:
| Q |
139 |
ttacagtcttgttattatgattgtaacattataaagattcgttggtgcttccacccagcagcatatcacgattccacattgctacctctttgtactacat |
238 |
Q |
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| T |
42121594 |
ttacagtcttgttattatgatggtaacattataaagattcattggtgcttccatgcagcagcatatcacgattccaaattgctgcctctttgtactac-- |
42121691 |
T |
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| Q |
239 |
attctcccaccaattctcatgtatatat |
266 |
Q |
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| T |
42121692 |
attctcccaccaattttcatgtatatat |
42121719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 42121392 - 42121494
Alignment:
| Q |
17 |
aaaatcagtttgattggtgaactttcatagcaaacaggtaaagccagagacacaccaaataacctctgaaagaagagtcaatattcacaaaagattgtat |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
42121392 |
aaaatcagtttgattggtgaactttcatagtaaacaggtaaagccacggacataccaaataacctctgaaagaatattgaatattcacaaaagattgtat |
42121491 |
T |
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| Q |
117 |
att |
119 |
Q |
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||| |
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| T |
42121492 |
att |
42121494 |
T |
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