View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17962_high_34 (Length: 261)

Name: NF17962_high_34
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17962_high_34
NF17962_high_34
[»] chr7 (5 HSPs)
chr7 (5-251)||(19721748-19721994)
chr7 (47-251)||(19351166-19351370)
chr7 (27-251)||(19779351-19779575)
chr7 (27-251)||(19887808-19888032)
chr7 (28-242)||(19357657-19357874)
[»] chr3 (2 HSPs)
chr3 (27-251)||(32578962-32579186)
chr3 (26-242)||(12734896-12735121)
[»] scaffold0464 (1 HSPs)
scaffold0464 (24-240)||(7807-8023)
[»] chr2 (3 HSPs)
chr2 (26-251)||(18908906-18909131)
chr2 (44-251)||(18913654-18913861)
chr2 (130-242)||(18920871-18920983)
[»] chr6 (1 HSPs)
chr6 (55-251)||(14749174-14749370)
[»] chr8 (2 HSPs)
chr8 (43-93)||(11338839-11338889)
chr8 (43-87)||(11345371-11345415)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 19721748 - 19721994
Alignment:
Q  5 atgttgtgcctcctaatggcaattgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19721748 atgttgtgcctcctaatggcaattgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagta 19721847  T
Q  105 tcaatggactgatattttagtcgagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaa 204  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19721848 tcaatggactgatattttagtcgagcaatttgtaattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaa 19721947  T
Q  205 gtaccaactgttgagccgtctgttactgtattgatggactgcctatg 251  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  19721948 gtaccaactgttgagccgtctgttactgtattgatggactgtctatg 19721994  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 47 - 251
Target Start/End: Complemental strand, 19351370 - 19351166
Alignment:
Q  47 atggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtcgagcaatttgtgattgtctc 146  Q
    ||||||| |||||||| ||  ||||||||||||||||||||| ||| |  ||| | ||| |||||| |||||||  | ||||||||||||||||| | ||    
T  19351370 atggtgtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagaatcgagcaatttgtgattatttc 19351271  T
Q  147 gcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctgttactgtattgatggactgc 246  Q
     |||||||||| ||||||||||||||||||| | |||||||||   || ||||||||||||||| ||| |||||| || ||||||||||||||||| ||     
T  19351270 acttgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgctgagccatccgttactgtattgatggattgt 19351171  T
Q  247 ctatg 251  Q
    |||||    
T  19351170 ctatg 19351166  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 19779351 - 19779575
Alignment:
Q  27 ttgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtc 126  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| ||| | ||| || ||| | |||| |||||||| | |     
T  19779351 ttgtcatccatatgtgaataatggtgtttatgtgagtggcactattaactggttgactattcaaaataagaccgaatatgagtggaatgatatttcaatt 19779450  T
Q  127 gagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctg 226  Q
    || |||||| | ||  |||| ||||||||| |||| ||||| || |||||  ||  ||||||| |||| |||||||| |||||| ||||||| ||  |||    
T  19779451 gatcaatttctcatcctctcacttgatctgactaccgagacgtaccaacatttgcggccacctcagggatttgttgatgtaccacctgttgatccagctg 19779550  T
Q  227 ttactgtattgatggactgcctatg 251  Q
    |||||||||||||||| || |||||    
T  19779551 ttactgtattgatggattgtctatg 19779575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 19888032 - 19887808
Alignment:
Q  27 ttgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtc 126  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| ||| | ||| || ||| | |||| |||||||| | |     
T  19888032 ttgtcatccatatgtgaataatggtgtttatgtgagtggcactattaactggttgactattcaaaataagaccgaatatgagtggaatgatatttcaatt 19887933  T
Q  127 gagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctg 226  Q
    || |||||| | ||  |||| ||||||||| |||| ||||| || |||||  ||  ||||||| |||| |||||||| |||||| ||||||| ||  |||    
T  19887932 gatcaatttctcatcctctcacttgatctgactaccgagacgtaccaacatttgcggccacctcagggatttgttgatgtaccacctgttgatccagctg 19887833  T
Q  227 ttactgtattgatggactgcctatg 251  Q
    |||||||||||||||| || |||||    
T  19887832 ttactgtattgatggattgtctatg 19887808  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 19357657 - 19357874
Alignment:
Q  28 tgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactg---agtatcaatggactgatattttag 124  Q
    |||||||||||| |||||  ||| || |||||||| ||||||||||||||||||||||||||||| | |||||   | ||| |||||  |||||||  |     
T  19357657 tgtcatccatttttgaattgtggcgtgtatgtgagaggcactattaactggttggctattcgaaatatgactgatcaatatgaatggcgtgatattacaa 19357756  T
Q  125 tcgagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtc 224  Q
    | || ||||||||||| ||||| ||||||||||| ||||||||||||   ||| || ||||||||   || ||||||||||||||| || || |||| |     
T  19357757 ttgatcaatttgtgatcgtctcacttgatctggccacggagacatataggcagttgctgccacctagcggttttgttgaagtaccacctattcagccatt 19357856  T
Q  225 tgttactgtattgatgga 242  Q
    ||| ||||||||||||||    
T  19357857 tgtaactgtattgatgga 19357874  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 32579186 - 32578962
Alignment:
Q  27 ttgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtc 126  Q
    ||||||||||| ||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| | |||||| ||| || ||| |||||||| | ||    
T  32579186 ttgtcatccatatgtgaataacggtgtgtatgtgagtggcactattaattggttggctattcgaaataagactgaatatgaaaggaatgatatttcaatc 32579087  T
Q  127 gagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctg 226  Q
    ||||||||| | ||| | || ||||||||| ||||||||||||| | |||  || ||||| |  |||| ||||||||||||||| | ||||||||  |||    
T  32579086 gagcaatttctcattttatcacttgatctgactacggagacataccgacatttgctgccatcgcagggatttgttgaagtaccaccggttgagccagctg 32578987  T
Q  227 ttactgtattgatggactgcctatg 251  Q
    ||||||| |||||||| || |||||    
T  32578986 ttactgtgttgatggattgtctatg 32578962  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 12735121 - 12734896
Alignment:
Q  26 attgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacac---------gactgagtatcaatggactga 116  Q
    ||||||||||||||| || | ||||||  ||||| || |||||| |||||||||||||||||||||| |          || ||| ||| |||||| |||    
T  12735121 attgtcatccatttgcgagtcatggtgcgtatgtaagtggcactgttaactggttggctattcgaaatattaaaaatatgaatgaatatgaatggaatga 12735022  T
Q  117 tattttagtcgagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgtt 216  Q
    ||||| |||| | ||||||||||| || || |||| ||||||||| ||||||| |   ||| ||||||||||  | || ||||||||| ||||| |||||    
T  12735021 tatttcagtcaaccaatttgtgatcgtatcacttgttctggctacagagacatttaggcagttgttgccacccaacggttttgttgaaataccacctgtt 12734922  T
Q  217 gagccgtctgttactgtattgatgga 242  Q
    ||||| ||||||||||||||||||||    
T  12734921 gagccatctgttactgtattgatgga 12734896  T

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Target: scaffold0464 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 7807 - 8023
Alignment:
Q  24 caattgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatatttta 123  Q
    ||||||||||||||||||||    |||||  |||||||| |||||| |||||||||||||||||||||| | || ||| ||| |||||| |||||||| |    
T  7807 caattgtcatccatttgtgagccgtggtgcgtatgtgagtggcactgttaactggttggctattcgaaatatgaatgaatatgaatggaatgatatttca 7906  T
Q  124 gtcgagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgt 223  Q
     || | ||||||||||| || || |||| ||||||||| ||||||| |   ||| || |||||||  | || ||||||||||||||| |||||||||| |    
T  7907 atcaaccaatttgtgatcgtatcacttgttctggctacagagacatttaggcagttgctgccacccaacggttttgttgaagtaccacctgttgagccat 8006  T
Q  224 ctgttactgtattgatg 240  Q
    |||||||||||||||||    
T  8007 ctgttactgtattgatg 8023  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 18909131 - 18908906
Alignment:
Q  26 attgtcatccatttgtgaataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagt 125  Q
    |||||| || ||| ||| |||| ||||| |||||||| ||  ||||||||||||||||||||||| | | |||||| ||| |||||| |||||||    |    
T  18909131 attgtcgtcgattggtggataacggtgtgtatgtgagtggttctattaactggttggctattcgagataagactgaatatgaatggaatgatattactat 18909032  T
Q  126 cgagcaatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtct 225  Q
    | | ||||||||||| |||||||||||| ||| ||| ||||||||||  ||  || ||||||||   || ||||||||||||||| ||||||| ||||||    
T  18909031 caaacaatttgtgatagtctcgcttgatttggatacagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtct 18908932  T
Q  226 gttactgtattgatggactgcctatg 251  Q
    |||| ||| |||||||| || |||||    
T  18908931 gttagtgtgttgatggattgtctatg 18908906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 251
Target Start/End: Complemental strand, 18913861 - 18913654
Alignment:
Q  44 ataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtcgagcaatttgtgattgt 143  Q
    |||| ||||| |||||||| || || ||||||||||||||||||||| | | |||  | ||| |||||| |||||||    | || ||||||||||| ||    
T  18913861 ataacggtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgatagt 18913762  T
Q  144 ctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctgttactgtattgatggac 243  Q
    |||||||||| ||||||| |||||||| |||||| |||||||||||   || |||||||||| |||| | ||||| |||||||||| ||| ||||||||     
T  18913761 ctcgcttgatttggctacagagacataccaacagttgttgccacctagcggttttgttgaagcaccacccgttgaaccgtctgttagtgtgttgatggat 18913662  T
Q  244 tgcctatg 251  Q
    || |||||    
T  18913661 tgtctatg 18913654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 18920983 - 18920871
Alignment:
Q  130 caatttgtgattgtctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctgtta 229  Q
    ||||||||||| |||||||||||| ||| ||| ||||||||||  ||  || ||||||||   || ||||||||||||||| ||||||| ||||||||||    
T  18920983 caatttgtgatagtctcgcttgatttggttacagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgtta 18920884  T
Q  230 ctgtattgatgga 242  Q
     ||| ||||||||    
T  18920883 gtgtgttgatgga 18920871  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 251
Target Start/End: Original strand, 14749174 - 14749370
Alignment:
Q  55 tatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtcgagcaatttgtgattgtctcgcttgatc 154  Q
    |||||||| |||| |||||||||||||||||||| ||| | ||| || ||| | | || |||||||| | |||| |||||| | ||||| || |||||||    
T  14749174 tatgtgagtggcagtattaactggttggctattcaaaataagaccgaatatgattagaatgatatttcaatcgaccaatttctcattgtttcacttgatc 14749273  T
Q  155 tggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctgttactgtattgatggactgcctatg 251  Q
    |  ||||||||||||| |  |   | ||||||||| |||| ||||||||||||||| |||||||||| ||||||||  | |||||||| || |||||    
T  14749274 taactacggagacataccgtcgtttcttgccacctcagggatttgttgaagtaccatctgttgagccatctgttaccattttgatggattgtctatg 14749370  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 11338889 - 11338839
Alignment:
Q  43 aataatggtgtttatgtgagcggcactattaactggttggctattcgaaac 93  Q
    ||||||||||| ||| |||| ||||||||| ||||||||||||||| ||||    
T  11338889 aataatggtgtatatttgagaggcactatttactggttggctattcaaaac 11338839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 11345415 - 11345371
Alignment:
Q  43 aataatggtgtttatgtgagcggcactattaactggttggctatt 87  Q
    ||||||||||| ||| |||| ||||||||| ||||||||||||||    
T  11345415 aataatggtgtgtatttgagaggcactatttactggttggctatt 11345371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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