View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_high_43 (Length: 247)
Name: NF17962_high_43
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_high_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 47652187 - 47652425
Alignment:
| Q |
11 |
atatcttagaaaataagaagactcagacactaatatagtttgctgtcacattgacaatttgtgatcaagaaatcggactgattgtaataataataagtct |
110 |
Q |
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| T |
47652187 |
atatcttagaaaataagaagactcagacactaatatagttagctgtcacattgacaatttgtgatcaagaaatcggactgattgtaataataataagtct |
47652286 |
T |
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| Q |
111 |
tgtgattgtt--attgataatcaaagataatatattaattcaaaaaagtataaaaggtactccaatgataatacatataaaatgatatcatcactaatta |
208 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47652287 |
tgtgattgttttattgataatcaaagataatatattaattcaaaaaagtataaaaggtactccaatgataatacatataaaatgatataatcactaatta |
47652386 |
T |
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| Q |
209 |
aagtaaatataaacaattataagtgatgtgatttacttc |
247 |
Q |
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| T |
47652387 |
aagtaaatataaacaataataagtgatgtgatttacttc |
47652425 |
T |
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