View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_high_47 (Length: 238)
Name: NF17962_high_47
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_high_47 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 45550035 - 45549814
Alignment:
| Q |
17 |
attatctccaaagacagagggagagaaatgacacccaggaattcatcaaaacaatccaccattaatcttcagaagaagaagaggcaatcattcataaacc |
116 |
Q |
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| T |
45550035 |
attatctccaaagacggagggagagaaatgacacccaggaattcatcaaaacaatccaccattaatcttcagaagaagaagaagcaatcattcataaacc |
45549936 |
T |
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| Q |
117 |
aacccacaccgttcaagatatcacgtggtgatctagatatagtcgcatctaatgagaaagtaaaagaaattattaaaagaaagaagtcctccccaagata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549935 |
aacccacaccgttcaagatatcacgtggtgatctagatatagtcgcatctaatgagaaagtaaaagaaattattaaaagaaagaagtcctccccaagata |
45549836 |
T |
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| Q |
217 |
tcaagaatttcaacgtgctaat |
238 |
Q |
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||||||||||||||| |||||| |
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| T |
45549835 |
tcaagaatttcaacgagctaat |
45549814 |
T |
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