View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_high_5 (Length: 489)
Name: NF17962_high_5
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 10 - 474
Target Start/End: Complemental strand, 33321782 - 33321320
Alignment:
| Q |
10 |
attatactctcaaggttagataaattttgtattctatattaatggagactatttggagaaaattgatttgatttatgatatctaaaattcagatatatcg |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
33321782 |
attatattctcaaggttagataaattttgtattctatattaatggagactatttggacaaaattgatttgatt-atgatatccaaaattcagatatatcg |
33321684 |
T |
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| Q |
110 |
agaaatggaggatgccaccgctcgtaaagtggtttacagttcagtcaatgtaaagggtccactgcatggtgcatcagtgaacgaaaactatcaacctttg |
209 |
Q |
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| T |
33321683 |
agaaatggaggatgccaccgctcgtaaagtggtttacagttcagtcaatgtaaagggtccactgcatggtgcatcagtgaacaaaaactatcaacctttg |
33321584 |
T |
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| Q |
210 |
agagctattgaccgaaaacgtcttgcagctagaaagaacagcaccacatactgctatgattttccacttgtaagtgatatttattgaatttagttgagtg |
309 |
Q |
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| T |
33321583 |
agagctattgaccgaaaacgtcttgcagctagaaagaacagcaccacatactgctatgattttccacttgtaagtgatatttattgaatttagttgagtg |
33321484 |
T |
|
| Q |
310 |
gattataagtcaagtcaaaataggttatctgatgagaaatgcttcttgcaggcatttcaaacatccttggaacagtcatggtcaattcaacaaacaagaa |
409 |
Q |
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| T |
33321483 |
gattataagtcaagtc-aaataggttatctgatgagaaatgcttcttgcaggcatttcaaacatccttggaacagtcatggtcaattcaacaaacaagaa |
33321385 |
T |
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| Q |
410 |
ttcaaatatccaaagataaggacctcctaaaagtaacagagctcaaattttcagagaaagaaggt |
474 |
Q |
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| T |
33321384 |
ttcaaatatccaaaggtaaggacctcctaaaagtaacagagctcaaattttcagagaaagaaggt |
33321320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 42 - 303
Target Start/End: Complemental strand, 33346924 - 33346662
Alignment:
| Q |
42 |
tctatattaatggagactatttggagaaaattgatttgattt--atgatatctaaaattcagatatatcgagaaatggaggatgccaccgctcgtaaagt |
139 |
Q |
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|||||||||| ||||| |||||| ||| | |||||||||||| || || ||||||||||||||||||||||| ||||||||||||| | ||| |||||| |
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| T |
33346924 |
tctatattaacggagattatttgtagata-ttgatttgattttcataatttctaaaattcagatatatcgagagatggaggatgccatcactcataaagt |
33346826 |
T |
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| Q |
140 |
ggtttacagttcagtcaatgtaaagggtccactgcatggtgcatcagtgaacgaaaactatcaacctttgagagctattgaccgaaaacgtcttgcagct |
239 |
Q |
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| T |
33346825 |
ggtctacagttcagtcactctaaagggaccactgcatggtgtaccggtgaatgaaaactatcaacctttgggagttattgaccgaaaacgtcttgcagca |
33346726 |
T |
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| Q |
240 |
agaaagaacagcaccacatactgctatgattttccacttgtaagtgatatttattgaatttagt |
303 |
Q |
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| T |
33346725 |
agaaagaacagcaccacatactgctatgattttccccttgtaagtgatatttaataaatttagt |
33346662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 306 - 470
Target Start/End: Complemental strand, 33346610 - 33346446
Alignment:
| Q |
306 |
agtggattataagtcaagtcaaaataggttatctgatgagaaatgcttcttgcaggcatttcaaacatccttggaacagtcatggtcaattcaacaaaca |
405 |
Q |
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||||||| | ||||| ||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| || ||| |
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| T |
33346610 |
agtggatgacaagtcgagtcaaactaggttatctgacgagaaatacttcgtgcaggcatttcaaacatccttggaacagtcctggtcaattcagcagaca |
33346511 |
T |
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| Q |
406 |
agaattcaaatatccaaagataaggacctcctaaaagtaacagagctcaaattttcagagaaaga |
470 |
Q |
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||||||||| | |||| |||||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
33346510 |
ggaattcaaaaagccaacgataaggatctcctaaaagtaacagagcttaaattttccgagaaaga |
33346446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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