View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_high_55 (Length: 235)
Name: NF17962_high_55
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 2771995 - 2771803
Alignment:
| Q |
22 |
tgagatacatacatatcctctcgattaacttcaaatcaactgggcctttatagttacagctagattgtgatagtagcatcaagcttggttagcaaaataa |
121 |
Q |
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| T |
2771995 |
tgagatacatacatatcctctcgattaacttcaaatcaactaggcctttatagttacagctagattatgatagtagcatcaagcttggttagcaaaataa |
2771896 |
T |
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| Q |
122 |
acatattcattcgaatgaagtagttttgattattattattaccaccagggaccagtcttaaacaccacaaatgtcaaaagtaggaaagaaatatcaaaac |
221 |
Q |
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| T |
2771895 |
acatattcatttgaatgaagtagttttgattattattattacca-------ccagtcttaaacaccacaaatgtcaaaagtaggaaagaaatatcaaaac |
2771803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 2834837 - 2834998
Alignment:
| Q |
2 |
gatggatgaaaccggttggctgagatacatacatatcctctcgattaacttcaaatcaactgggcctttatagttacagctagattgtgatagtagcatc |
101 |
Q |
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| T |
2834837 |
gatggatgaaaccggttggctgagacgcatacatatcgtccagatttactttaaatcaactaggcgtttaaatttacagctacataacgatagtagcatc |
2834936 |
T |
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| Q |
102 |
aagcttggttagcaaaataaacatattcattcgaatgaagtagttttgattattattattac |
163 |
Q |
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| T |
2834937 |
gatcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattattattattac |
2834998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 2794492 - 2794342
Alignment:
| Q |
1 |
tgatggatgaaaccggttggctgagatacatacatatcctctcgattaacttcaaatcaactgggcctttatagttacagctagattgtgatagtagcat |
100 |
Q |
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| T |
2794492 |
tgatggatgaaagcggttggctgagacacattcatgtcctctcaattaacttcaaatcattcagttatttgtagttatagcaagattatgatagtagcat |
2794393 |
T |
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| Q |
101 |
caagcttggttagcaaaataaacatattcattcgaatgaagtagttttgat |
151 |
Q |
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| T |
2794392 |
caatcttggtaagcaaagttaacatattcattcagatgaagtggttttgat |
2794342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 2821522 - 2821357
Alignment:
| Q |
4 |
tggatgaaaccggttggctgag----atacatacatatcctctcgattaacttcaaatcaactgggcctttatagttacagctagattgtgatag----- |
94 |
Q |
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| T |
2821522 |
tggatgaaaccggttggctgagacacatacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagca |
2821423 |
T |
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| Q |
95 |
-tagcatcaagcttggttagcaaaataaacatattcattcgaatgaagtagttttgattattatta |
159 |
Q |
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| T |
2821422 |
ttagcatcaatcttgattagccgaataaacaaattcattcaaatgaaatggttttgattattatta |
2821357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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