View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_high_56 (Length: 231)
Name: NF17962_high_56
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_high_56 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 2563745 - 2563545
Alignment:
| Q |
18 |
acatacaacaagtttgtatctcatattctgtctggccgtgacgactctcttccgcttcataagttaatatattttccactaacatcaaaaaagaaaataa |
117 |
Q |
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| T |
2563745 |
acatacaacaagtttgtatctcatattctgtctggccgtgacgactctcttccgcttcataagttaatatattttccactaacatcaaaaaagaaaataa |
2563646 |
T |
|
| Q |
118 |
gatattttcttcaagattcctcaaattcctcaaaaactacactcctagaggtcatgaaatatgctgcttcacataatgtcgaggaactcacaacctatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2563645 |
gatattttcttcaagattcctcaaattcctcaaaaactacactcctagaggtcatgaagtatgctgcttcacataatgtcgaggaactcacaacctatgc |
2563546 |
T |
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| Q |
218 |
t |
218 |
Q |
| |
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| |
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|
| T |
2563545 |
t |
2563545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 34800345 - 34800299
Alignment:
| Q |
150 |
aaaactacactcctagaggtcatgaaatatgctgcttcacataatgt |
196 |
Q |
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| T |
34800345 |
aaaaccacactcttagaggtcatggaatatgctgcgtcacataatgt |
34800299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 23273383 - 23273349
Alignment:
| Q |
150 |
aaaactacactcctagaggtcatgaaatatgctgc |
184 |
Q |
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| T |
23273383 |
aaaactacactcctagaggtcatgagatatgctgc |
23273349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 23410882 - 23410916
Alignment:
| Q |
150 |
aaaactacactcctagaggtcatgaaatatgctgc |
184 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
23410882 |
aaaactacactcctagaggtcatgagatatgctgc |
23410916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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