View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_high_58 (Length: 217)
Name: NF17962_high_58
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 5551756 - 5551881
Alignment:
| Q |
75 |
ttttgttggtaatatattctattttgacttgtttnnnnnnnntaaaattatttgtcatcggcttgaatgttgcaaagaagcaaatttttgaagtgattat |
174 |
Q |
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| T |
5551756 |
ttttgttggtaatatattctattttgacttgtttaaaaaaaataaaattatttttcatcggcttgaatgttgcaaagaagcaaatttttgaagtgattat |
5551855 |
T |
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| Q |
175 |
ttaaagtttttggctatccttaaaat |
200 |
Q |
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| T |
5551856 |
ttaaagtttttggctatccttaaaat |
5551881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5550970 - 5551013
Alignment:
| Q |
1 |
tataagtacaaaacaaaaatagttctctttcctttcaataatat |
44 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5550970 |
tataagtacaaaacaaaaatagttttctttcctttcaataatat |
5551013 |
T |
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