View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_high_7 (Length: 484)
Name: NF17962_high_7
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_high_7 |
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| [»] scaffold0151 (1 HSPs) |
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Alignment Details
Target: scaffold0151 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: scaffold0151
Description:
Target: scaffold0151; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Original strand, 19980 - 20435
Alignment:
| Q |
11 |
cagagataatcagaagctacatctcctataatgcctccttcttccccaagaataagatgatcttcaaaattcttcttcaccacttctaatatggcagttt |
110 |
Q |
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| T |
19980 |
cagagataatcggaagctacatctcctataatgcctccttcttccccaagaataagatgatcttcaaaattcttcttcaccacttctaatatggcagctt |
20079 |
T |
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| Q |
111 |
cactcattttatccgtcctgtaaatttacaaatgactcttttttggttaaagaggcgataaaaacatgtaaatcttttatacgaagattaaagaagataa |
210 |
Q |
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| T |
20080 |
cactcattttatccgtcctgtaaatttacaaatgactcttatttggttaaagaggcgaaaaaaacatgtaaatcgtttatacgaagattaaagaagataa |
20179 |
T |
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| Q |
211 |
gcattaaacatagattcaatgagaccttactcagtcaccaagtcagttaatcctttatacgtaatactccttggcttattaacagcatccatcacaacct |
310 |
Q |
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| T |
20180 |
gcattaaacatagattcaacgagaccttactcagtcaccaagtcagttaatcctttatacgtaatactccttggcttattaacagcatccatcacaacct |
20279 |
T |
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| Q |
311 |
gtatataaccaacggaggtaattagatgtcaaagcataacttaaacaggnnnnnnntacagtggacgttaaactgaaacagtacaaatctgtaaaactgc |
410 |
Q |
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| T |
20280 |
gtatataaccaacgaaggtaattggatgtcaaagcataacttaaacaggaaaaaaatacagtggacgttaaactgaaacagtacaaatctgtaaaactgc |
20379 |
T |
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| Q |
411 |
gatattagactatgatacaggacatcacaaattactccattaatgcaactgctctt |
466 |
Q |
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| T |
20380 |
gatattagactatgatacaggacatcacaaattactccattaatgcaactgctctt |
20435 |
T |
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