View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17962_high_9 (Length: 452)

Name: NF17962_high_9
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17962_high_9
NF17962_high_9
[»] chr1 (6 HSPs)
chr1 (329-435)||(34453263-34453369)
chr1 (1-83)||(34453500-34453582)
chr1 (152-220)||(34453367-34453435)
chr1 (159-220)||(35883498-35883558)
chr1 (163-220)||(27804723-27804779)
chr1 (176-216)||(49020430-49020469)
[»] chr2 (10 HSPs)
chr2 (160-220)||(13453846-13453905)
chr2 (159-215)||(28544143-28544199)
chr2 (163-220)||(34432388-34432444)
chr2 (160-220)||(22966907-22966966)
chr2 (160-216)||(31629725-31629780)
chr2 (163-218)||(39801060-39801114)
chr2 (169-219)||(43820633-43820682)
chr2 (163-216)||(30415138-30415190)
chr2 (160-216)||(40106719-40106774)
chr2 (164-220)||(45376110-45376165)
[»] chr4 (6 HSPs)
chr4 (159-216)||(32556492-32556549)
chr4 (169-220)||(13140194-13140244)
chr4 (169-220)||(45511448-45511498)
chr4 (163-216)||(1015101-1015153)
chr4 (163-220)||(52372100-52372156)
chr4 (159-192)||(52378958-52378991)
[»] chr6 (3 HSPs)
chr6 (160-220)||(31204701-31204760)
chr6 (163-213)||(10840842-10840891)
chr6 (160-216)||(34019824-34019879)
[»] chr8 (5 HSPs)
chr8 (169-220)||(26629000-26629050)
chr8 (169-216)||(39199890-39199936)
chr8 (175-216)||(10839507-10839547)
chr8 (160-220)||(4721850-4721909)
chr8 (160-216)||(14127367-14127422)
[»] scaffold0086 (1 HSPs)
scaffold0086 (176-220)||(15726-15769)
[»] chr5 (4 HSPs)
chr5 (177-220)||(35165820-35165862)
chr5 (174-216)||(4719656-4719697)
chr5 (175-216)||(1293111-1293151)
chr5 (163-219)||(35475938-35475993)
[»] chr7 (4 HSPs)
chr7 (153-220)||(27305916-27305984)
chr7 (160-216)||(6427332-6427387)
chr7 (160-216)||(6892529-6892584)
chr7 (160-216)||(11503472-11503527)
[»] scaffold0295 (1 HSPs)
scaffold0295 (160-220)||(6034-6093)
[»] chr3 (1 HSPs)
chr3 (176-216)||(52963342-52963381)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 329 - 435
Target Start/End: Complemental strand, 34453369 - 34453263
Alignment:
Q  329 tccaaaaccaaagtatttcatttggtttctattaatggtgtactcgatctctcatatatttaggaatgactttatctttaatttgatcaaccaatttttt 428  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34453369 tccaaaaccaaagtatttcatttggtttctattaatggtgtattcgatctctcatatatttaggaatgactttatctttaatttgatcaaccaatttttt 34453270  T
Q  429 cttagtt 435  Q
    |||||||    
T  34453269 cttagtt 34453263  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34453582 - 34453500
Alignment:
Q  1 actcagttgccttgtagttatatttaaatttaaattatgtgattgattagttgtgcgcaaggataatttcatgctatttgtga 83  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34453582 actcagttgccttttagttatatttaaatttaaattatatgattgattagttgtgcgcaaggataatttcatgctatttgtga 34453500  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 34453435 - 34453367
Alignment:
Q  152 atccaataaagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  34453435 atccaataaatagagagaaagtggttgtcacaaaaattgtacaaaaattggttgtataaatatcactcc 34453367  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 35883558 - 35883498
Alignment:
Q  159 aaagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    ||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||| |||||    
T  35883558 aaagagagaaaaagtggttgtcacaaaggttgta-caaaattggttgtacaaatattactcc 35883498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 27804779 - 27804723
Alignment:
Q  163 agagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    ||||| |||||||||||||||||  |||| ||||| ||||||||||||||||||||||    
T  27804779 agagaaaaagtggttgtcacaaagattgtgtaaaa-ttggttgtacaaatatcactcc 27804723  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 49020430 - 49020469
Alignment:
Q  176 ttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  49020430 ttgtcacaaaagttgt-taaaaaatggttgtacaaatatca 49020469  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 13453905 - 13453846
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    |||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  13453905 aagagagaaaaagtggttgtcacaaaaattgtat-aaaattggttgtacaaatatcactcc 13453846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 28544143 - 28544199
Alignment:
Q  159 aaagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatc 215  Q
    ||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  28544143 aaagagagaaaaagtggttgtcacaaaagttgtacaaaaattgattgtacaaatatc 28544199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 34432444 - 34432388
Alignment:
Q  163 agagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    ||||| ||| ||||||||| |||||||||| |||| ||||||||||||||||||||||    
T  34432444 agagaaaaaatggttgtcaaaaaagttgtacaaaa-ttggttgtacaaatatcactcc 34432388  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 22966907 - 22966966
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    |||||||| || ||| |||||||||| |||||| |||| ||||||||||||||||||||||    
T  22966907 aagagagaaaatgtgattgtcacaaaggttgtacaaaa-ttggttgtacaaatatcactcc 22966966  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 31629725 - 31629780
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    |||||||||||||||||||||||| ||||||| | || ||| |||||||||||||||    
T  31629725 aagagagagaaagtggttgtcacataagttgtct-aagattagttgtacaaatatca 31629780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 39801114 - 39801060
Alignment:
Q  163 agagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcact 218  Q
    ||||| |||||| |||||||||| |||||| |||| ||||||||||||||||||||    
T  39801114 agagaaaaagtgattgtcacaaaggttgtacaaaa-ttggttgtacaaatatcact 39801060  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 43820682 - 43820633
Alignment:
Q  169 aaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactc 219  Q
    |||||||||||||||||  || ||||||| |||||||||||||||||||||    
T  43820682 aaagtggttgtcacaaagattatataaaa-ttggttgtacaaatatcactc 43820633  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 30415138 - 30415190
Alignment:
Q  163 agagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    ||||| ||| ||||||||||||||||||| | |||||| |||||||||||||||    
T  30415138 agagaaaaaatggttgtcacaaaagttgtct-aaaatttgttgtacaaatatca 30415190  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 40106719 - 40106774
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    |||||||| ||||||||||||||||||||||| | |  |||| ||||||||||||||    
T  40106719 aagagagaaaaagtggttgtcacaaaagttgtct-aggattgattgtacaaatatca 40106774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 45376165 - 45376110
Alignment:
Q  164 gagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    |||| ||||||||||||||||| ||||| | |||| | |||||||||||||||||||    
T  45376165 gagaaaaagtggttgtcacaaaggttgt-ttaaaactagttgtacaaatatcactcc 45376110  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 32556549 - 32556492
Alignment:
Q  159 aaagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    ||||||||| ||||||||| ||||||||||| || ||||||||||| |||||||||||    
T  32556549 aaagagagaaaaagtggttatcacaaaagttatacaaaaattggttatacaaatatca 32556492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 13140244 - 13140194
Alignment:
Q  169 aaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    ||||| |||||||||| ||||||| |||| ||||||||||||||||||||||    
T  13140244 aaagtagttgtcacaagagttgtacaaaa-ttggttgtacaaatatcactcc 13140194  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 45511448 - 45511498
Alignment:
Q  169 aaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    ||||||| ||||||||||||||| ||||| |||| |||||||||||||||||    
T  45511448 aaagtggatgtcacaaaagttgtttaaaa-ttggatgtacaaatatcactcc 45511498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 1015101 - 1015153
Alignment:
Q  163 agagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    ||||| |||||||||| |||||| |||||| |||| ||||||||||||||||||    
T  1015101 agagaaaaagtggttgccacaaaggttgtacaaaa-ttggttgtacaaatatca 1015153  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 52372156 - 52372100
Alignment:
Q  163 agagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    ||||| |||||| ||||||||||| || || |||||||| ||||||||||||||||||    
T  52372156 agagaaaaagtgattgtcacaaaatttata-aaaaattgattgtacaaatatcactcc 52372100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 52378991 - 52378958
Alignment:
Q  159 aaagagagagaaagtggttgtcacaaaagttgta 192  Q
    ||||||||| ||||||||||||||||||||||||    
T  52378991 aaagagagaaaaagtggttgtcacaaaagttgta 52378958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 31204760 - 31204701
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    |||||||| ||||||||||||||||| ||||||  ||||||| ||||||||||||||||||    
T  31204760 aagagagaaaaagtggttgtcacaaaggttgta-caaaattgattgtacaaatatcactcc 31204701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 10840842 - 10840891
Alignment:
Q  163 agagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaata 213  Q
    ||||| ||||||||||||||||||||||| | | |||||||||||||||||    
T  10840842 agagaaaaagtggttgtcacaaaagttgt-ttagaattggttgtacaaata 10840891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 34019879 - 34019824
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    |||||||| ||||||||| ||||||| |||||| |||| || |||||||||||||||    
T  34019879 aagagagaaaaagtggttatcacaaaggttgtacaaaa-ttagttgtacaaatatca 34019824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 26629050 - 26629000
Alignment:
Q  169 aaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  26629050 aaagtggttgtcacaaatgttgtacaaaa-ttggttgtacaaatatcactcc 26629000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 39199936 - 39199890
Alignment:
Q  169 aaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    ||||||||||||||||||||||| | || |||||||||||||||||||    
T  39199936 aaagtggttgtcacaaaagttgt-ttaagattggttgtacaaatatca 39199890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 10839507 - 10839547
Alignment:
Q  175 gttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  10839507 gttgtcacaaaagttgt-taaaaattggttgttcaaatatca 10839547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 4721850 - 4721909
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    |||||||  |||||||||||| |||||||||| | |||||  |||||||||||||||||||    
T  4721850 aagagaggaaaagtggttgtctcaaaagttgt-ttaaaatgagttgtacaaatatcactcc 4721909  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 14127367 - 14127422
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    |||||||  ||||||||||||||||||||||| | |  |||||||||||||||||||    
T  14127367 aagagaggaaaagtggttgtcacaaaagttgt-ttaggattggttgtacaaatatca 14127422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 15769 - 15726
Alignment:
Q  176 ttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||    
T  15769 ttgtcacaaaggttgtataaaa-ttggttgtacaaatatcactcc 15726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 35165820 - 35165862
Alignment:
Q  177 tgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||    
T  35165820 tgtcacaaaggttgtataaaa-ttggttgtacaaatatcactcc 35165862  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 4719697 - 4719656
Alignment:
Q  174 ggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  4719697 ggttgtcacaaaagttgtc-aaaaattggttgtacaaatatca 4719656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 1293111 - 1293151
Alignment:
Q  175 gttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  1293111 gttgtcacaaaagttgt-taaaaaatggttgtacaaatatca 1293151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 35475938 - 35475993
Alignment:
Q  163 agagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactc 219  Q
    ||||| ||||||||||||| |||| |||||| |||||| ||| ||||||||||||||    
T  35475938 agagaaaaagtggttgtcaaaaaaattgtat-aaaattagttatacaaatatcactc 35475993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 27305984 - 27305916
Alignment:
Q  153 tccaataaagagagagaaag--tggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    ||||||||| |||||||||   ||||||||||||||||||||  ||||||| ||||| ||||||||||||    
T  27305984 tccaataaaaagagagaaaagatggttgtcacaaaagttgta-caaaattgattgtataaatatcactcc 27305916  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 6427332 - 6427387
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    |||||||  |||||| |||||||||||||||| | ||||||| ||||||||||||||    
T  6427332 aagagaggaaaagtgcttgtcacaaaagttgtct-aaaattgattgtacaaatatca 6427387  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 6892584 - 6892529
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    |||||||| ||||| ||||||||||||||||| | |  |||||||||||||||||||    
T  6892584 aagagagaaaaagttgttgtcacaaaagttgtct-atgattggttgtacaaatatca 6892529  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 11503527 - 11503472
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    |||||||| ||||||||||||||||||||| | | | ||||||| ||||||||||||    
T  11503527 aagagagaaaaagtggttgtcacaaaagttttct-agaattggtcgtacaaatatca 11503472  T

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Target: scaffold0295 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 6093 - 6034
Alignment:
Q  160 aagagagagaaagtggttgtcacaaaagttgtataaaaattggttgtacaaatatcactcc 220  Q
    |||||||  ||| ||||||||||||| ||||| ||||| |||| |||||||||||||||||    
T  6093 aagagaggaaaaatggttgtcacaaatgttgtttaaaa-ttggatgtacaaatatcactcc 6034  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 52963342 - 52963381
Alignment:
Q  176 ttgtcacaaaagttgtataaaaattggttgtacaaatatca 216  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  52963342 ttgtcacaaaagttgt-taaaaaatggttgtacaaatatca 52963381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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