View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_1 (Length: 703)
Name: NF17962_low_1
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 17 - 684
Target Start/End: Original strand, 47126248 - 47126922
Alignment:
| Q |
17 |
acacgacacttacatgatgacaccaataataatttaaga---tgaaataattgaatgtacccacatatgtttggatcgtgtcggacaccaaac----ctt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
47126248 |
acacgacacttacatgatgacaccaataataatttaagaaaatgaaataattgaatgtacccacatatgtttggatcgtgtcgaacaccaaacacacctt |
47126347 |
T |
|
| Q |
110 |
caatctaaagtgtcggtgatacatagtttattcgataccaaagctaagtctttggttagataaatagcaagaattcaaagagaatggtttcagatggata |
209 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47126348 |
caatctaaagtgtcggtgatacatagtttattcgacaccaaagctaagtctttggttagataaatagcaaaaattcaaagagaatggtttcagatggata |
47126447 |
T |
|
| Q |
210 |
tgctgttgggaattcccttaccagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtatatggcaatttcactggcccatttct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47126448 |
tgctgttgggaattcccttaccagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtataaggcaatttcactggcccatttct |
47126547 |
T |
|
| Q |
310 |
gttcttcaaacttgggtctttgttccttttcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcagcgtct |
409 |
Q |
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| T |
47126548 |
gttcttcaaacttgggtccttgttccttttcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcagcgtct |
47126647 |
T |
|
| Q |
410 |
gcagtccaatcagggtctactgtctgcccaagataaacctcttcagtcgaatgcctagacagaacttctatcaatgacacaccaagaagagtttggaact |
509 |
Q |
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| T |
47126648 |
gcagtccaatcagggtctactgtctgtccaagataaacctcttcagtcgaatgcctagacagaacttctatcaatgacacaccaagaagagtttggaact |
47126747 |
T |
|
| Q |
510 |
gagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgctcaggcataaacctacgactaaccgttgg |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47126748 |
gagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgctcaggcataaacctacgactaaccgttgg |
47126847 |
T |
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| Q |
610 |
acgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatat |
684 |
Q |
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| T |
47126848 |
acgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatat |
47126922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 605 - 684
Target Start/End: Original strand, 46709155 - 46709234
Alignment:
| Q |
605 |
gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatat |
684 |
Q |
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|||||||| |||||| |||||||||| |||| |||||||||||||| ||||||||||| | ||| ||||| | |||||| |
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| T |
46709155 |
gttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat |
46709234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 675
Target Start/End: Complemental strand, 9606339 - 9606287
Alignment:
| Q |
623 |
taacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagc |
675 |
Q |
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|||||| ||||||| ||||||||||| || ||||||||||||| ||||||||| |
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| T |
9606339 |
taacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagc |
9606287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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