View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17962_low_10 (Length: 454)

Name: NF17962_low_10
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17962_low_10
NF17962_low_10
[»] chr5 (7 HSPs)
chr5 (8-182)||(14725177-14725347)
chr5 (350-436)||(14724959-14725045)
chr5 (246-334)||(14725031-14725115)
chr5 (13-58)||(42522723-42522768)
chr5 (18-66)||(8515620-8515668)
chr5 (23-58)||(16321038-16321073)
chr5 (13-58)||(17822185-17822230)
[»] chr3 (4 HSPs)
chr3 (8-110)||(35258872-35258973)
chr3 (13-58)||(17583228-17583273)
chr3 (13-58)||(19578700-19578745)
chr3 (24-56)||(48240026-48240058)
[»] chr6 (2 HSPs)
chr6 (13-64)||(8478980-8479031)
chr6 (13-58)||(22793690-22793735)
[»] scaffold1777 (1 HSPs)
scaffold1777 (13-58)||(595-640)
[»] chr8 (3 HSPs)
chr8 (13-66)||(13206131-13206184)
chr8 (13-58)||(19341870-19341915)
chr8 (29-57)||(295999-296027)
[»] chr7 (1 HSPs)
chr7 (13-58)||(29285589-29285634)
[»] chr4 (3 HSPs)
chr4 (28-57)||(44342290-44342319)
chr4 (13-66)||(47044843-47044896)
chr4 (13-58)||(47393568-47393613)
[»] chr2 (2 HSPs)
chr2 (13-66)||(23914587-23914640)
chr2 (26-66)||(23914786-23914826)
[»] chr1 (4 HSPs)
chr1 (13-66)||(35632987-35633040)
chr1 (14-66)||(10428263-10428315)
chr1 (26-66)||(14259162-14259202)
chr1 (26-66)||(27856532-27856572)
[»] scaffold0018 (1 HSPs)
scaffold0018 (13-57)||(36811-36855)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 14725347 - 14725177
Alignment:
Q  8 ccaagaatataattaaatttcttatatttttcaataacaccaacaatataaaattcttacacacatttttgataaaagtataactgaaatagtaaaaaat 107  Q
    |||| |||||||| ||| |||||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||||||||||||||   |||||    
T  14725347 ccaataatataataaaaattcttatatttttcaataacaccagcaatataacattcttacacacaaatttgataaaagtataactgaaatag---aaaat 14725251  T
Q  108 tcagaaagnnnnnnnccatgactccctttatatatttgttgtatacaatattataccaatacagttgtagataaa 182  Q
    ||||||||       ||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||    
T  14725250 tcagaaagaaaaaaaccatgactccctttatata-ttgttgtatacaatatcataccaatactgttgtagataaa 14725177  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 350 - 436
Target Start/End: Complemental strand, 14725045 - 14724959
Alignment:
Q  350 tcctcatctttatgtgtgtatcctaacttctttgcagaaagacatattagcaatacaaattcacggatcacttttgagtacctagat 436  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14725045 tcctcatctttatgtgtgtatcctaacttctttacagaaagacatattagcaatacaaattcacggatcacttttgagtacctagat 14724959  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 334
Target Start/End: Complemental strand, 14725115 - 14725031
Alignment:
Q  246 aatcatggtgttggacataaaaaatgatctccacggccacgtgacatttatctaaaaatatgtgtgatatattgtcctcatctttatgt 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  14725115 aatcatggtgttggacataaaaaatgatctccacggccacgtgacatttatctaaaaatatgtgtg----attgtcctcatctttatgt 14725031  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 42522723 - 42522768
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataa 58  Q
    |||||||| ||| ||||||||||||| |||||||||||||||||||    
T  42522723 aatataataaaaattcttatattttttaataacaccaacaatataa 42522768  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 8515620 - 8515668
Alignment:
Q  18 aattaaatttcttatatttttcaataacaccaacaatataaaattctta 66  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| |||||||    
T  8515620 aattaaaattcttatctttttcaataacaccaataatataacattctta 8515668  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 16321038 - 16321073
Alignment:
Q  23 aatttcttatatttttcaataacaccaacaatataa 58  Q
    |||||||||||||||||||| |||||||||||||||    
T  16321038 aatttcttatatttttcaatgacaccaacaatataa 16321073  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 17822185 - 17822230
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataa 58  Q
    |||||||  ||| ||||||| |||||||||||||||||||||||||    
T  17822185 aatataacaaaaattcttatctttttcaataacaccaacaatataa 17822230  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 35258872 - 35258973
Alignment:
Q  8 ccaagaatataattaaatttcttatatttttcaataacaccaacaatataaaattcttacacacatttttgataaaagtataactgaaatagtaaaaaat 107  Q
    |||| |||||||| ||| ||||||| ||||||||||||| ||||||||||| ||| ||| |  ||  ||||||||  |||||| ||||||| ||||||||    
T  35258872 ccaataatataataaaaattcttatctttttcaataacatcaacaatataacatt-ttaaaagcaaatttgataagggtataattgaaataataaaaaat 35258970  T
Q  108 tca 110  Q
    |||    
T  35258971 tca 35258973  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 17583273 - 17583228
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataa 58  Q
    |||||||| ||| ||||||| ||||| |||||||||||||||||||    
T  17583273 aatataataaaaattcttatcttttttaataacaccaacaatataa 17583228  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 19578745 - 19578700
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataa 58  Q
    |||||||| |||  |||||||||||| |||||||||||||||||||    
T  19578745 aatataataaaaactcttatattttttaataacaccaacaatataa 19578700  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 48240058 - 48240026
Alignment:
Q  24 atttcttatatttttcaataacaccaacaatat 56  Q
    |||||||||||||||||||| ||||||||||||    
T  48240058 atttcttatatttttcaatagcaccaacaatat 48240026  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 8479031 - 8478980
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataaaattct 64  Q
    |||||||| ||| ||||||||||||||| ||||| |||||||||||| ||||    
T  8479031 aatataataaaaattcttatatttttcattaacatcaacaatataaacttct 8478980  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 22793690 - 22793735
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataa 58  Q
    |||||||| ||| ||||||| ||||| |||||||||||||||||||    
T  22793690 aatataataaaaattcttatctttttaaataacaccaacaatataa 22793735  T

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Target: scaffold1777 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1777
Description:

Target: scaffold1777; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 640 - 595
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataa 58  Q
    ||||||||  || ||||||||||||||||||| |||||||||||||    
T  640 aatataatataaattcttatatttttcaataataccaacaatataa 595  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 13206131 - 13206184
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataaaattctta 66  Q
    |||||| | ||| ||||||| ||||||| ||||||||||||||||| |||||||    
T  13206131 aatatattaaaaattcttatctttttcattaacaccaacaatataacattctta 13206184  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 19341915 - 19341870
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataa 58  Q
    |||||||| ||| ||||||||||||| |||||| ||||||||||||    
T  19341915 aatataataaaaattcttatattttttaataacgccaacaatataa 19341870  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 295999 - 296027
Alignment:
Q  29 ttatatttttcaataacaccaacaatata 57  Q
    |||||||||||||||||||||||||||||    
T  295999 ttatatttttcaataacaccaacaatata 296027  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 29285634 - 29285589
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataa 58  Q
    ||||||||  || ||||||| |||||||||||||||||||||||||    
T  29285634 aatataatataaattcttatgtttttcaataacaccaacaatataa 29285589  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 44342290 - 44342319
Alignment:
Q  28 cttatatttttcaataacaccaacaatata 57  Q
    ||||||||||||||||||||||||||||||    
T  44342290 cttatatttttcaataacaccaacaatata 44342319  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 47044843 - 47044896
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataaaattctta 66  Q
    ||||||||| || ||||||| |||||||||||||||| ||| |||| |||||||    
T  47044843 aatataatttaaattcttatctttttcaataacaccagcaaaataacattctta 47044896  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 47393613 - 47393568
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataa 58  Q
    ||||||||  |||||||||||||||| ||| |||||||||||||||    
T  47393613 aatataatataatttcttatatttttgaatgacaccaacaatataa 47393568  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 23914640 - 23914587
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataaaattctta 66  Q
    ||||||||  || ||||||| |||||||||||||| |||||||||| |||||||    
T  23914640 aatataatataaattcttatctttttcaataacacaaacaatataacattctta 23914587  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 23914826 - 23914786
Alignment:
Q  26 ttcttatatttttcaataacaccaacaatataaaattctta 66  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  23914826 ttcttatatttttcaatattaccaacaatataacattctta 23914786  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 35633040 - 35632987
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatataaaattctta 66  Q
    ||||||||  || ||||||||||||| |||||||||||||| |||| |||||||    
T  35633040 aatataatataaattcttatattttttaataacaccaacaaaataacattctta 35632987  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 10428263 - 10428315
Alignment:
Q  14 atataattaaatttcttatatttttcaataacaccaacaatataaaattctta 66  Q
    ||||||| ||| ||||||| |||||||| |||||||||||||||  |||||||    
T  10428263 atataataaaaattcttatctttttcaagaacaccaacaatatagcattctta 10428315  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 14259202 - 14259162
Alignment:
Q  26 ttcttatatttttcaataacaccaacaatataaaattctta 66  Q
    ||||||||||||||||| |||||||||| |||| |||||||    
T  14259202 ttcttatatttttcaatgacaccaacaaaataatattctta 14259162  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 27856572 - 27856532
Alignment:
Q  26 ttcttatatttttcaataacaccaacaatataaaattctta 66  Q
    ||||||| |||||||||||| ||||||||||| ||||||||    
T  27856572 ttcttatctttttcaataacgccaacaatatagaattctta 27856532  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 36855 - 36811
Alignment:
Q  13 aatataattaaatttcttatatttttcaataacaccaacaatata 57  Q
    |||||||| ||| ||||||| ||||| ||||||||||||||||||    
T  36855 aatataataaaaattcttatcttttttaataacaccaacaatata 36811  T

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